Detailed information of OS493_018729-T1 in Lophelia pertusa

Genomic Location: scaffold_62:1713857...1724352
NR annotation: KAJ7385036.1, CD40 signaling pathway [Desmophyllum pertusum]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
Q924T7E3 ubiquitin-protein ligase RNF31 OS=Mus musculus OX=10090 GN=Rnf31 PE=1 SV=2
Q96EP0E3 ubiquitin-protein ligase RNF31 OS=Homo sapiens OX=9606 GN=RNF31 PE=1 SV=1
Q8IPJ3E3 ubiquitin-protein ligase lubel OS=Drosophila melanogaster OX=7227 GN=LUBEL PE=1 SV=2
 Gene family
Gene familySubfamily
Ubiquitin FamilyE3|E3 activity|RBR

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF01485IBRIBR domain, a half RING-finger domainDomainInterproscan
PF18091E3_UbLigase_RBRE3 Ubiquitin Ligase RBR C-terminal domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR002867DomainIBR domainInterproscan
IPR047540DomainE3 ubiquitin-protein ligase RNF31-like, BRcat domainInterproscan
IPR041031DomainRNF31, C-terminalInterproscan
IPR044066DomainTRIAD supradomainInterproscan
IPR026254FamilyE3 ubiquitin-protein ligase RNF31-likeInterproscan
IPR013083Homologous_superfamilyZinc finger, RING/FYVE/PHD-typeInterproscan
IPR047542DomainE3 ubiquitin-protein ligase RNF31-like, Rcat domainInterproscan
IPR017907Conserved_siteZinc finger, RING-type, conserved siteInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR16004RING FINGER PROTEIN 31-RELATEDInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0008270Molecular Functionzinc ion bindingInterproscan
GO:0004842Molecular Functionubiquitin-protein transferase activityInterproscan
GO:0036435Molecular FunctionK48-linked polyubiquitin modification-dependent protein bindingInterproscan
GO:0061630Molecular Functionubiquitin protein ligase activityInterproscan
GO:0070530Molecular FunctionK63-linked polyubiquitin modification-dependent protein bindingInterproscan
GO:0071797Cellular ComponentLUBAC complexInterproscan
GO:0097039Biological Processprotein linear polyubiquitinationInterproscan
GO:1990450Molecular Functionlinear polyubiquitin bindingInterproscan

Expression pattern
 Expression trend for OS493_018729-T1 global co-expression network
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