Gene detail

Detailed information of OS493_018700-T1 in Lophelia pertusa Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
OS493_018700-T1	ENHANCER OF MRNA-DECAPPING PROTEIN 4	scaffold_62	1250626	1274197	-

Gene Structure

More details in Jbrowse Sequence

CDS

OS493_018700-T1

ATGGACGATAATGCAAGAGGAGTGGCCTCTAAAATACTCTGCGACCTTCTCAACATTGCAAAAGGAGGAAACACGGCCACTGCTAATGAAGATAATAAAGTTGGTAATGGTTTAGAAAGACAAAGAATTGGAGAAAGAGATGCTGATGATTCTATAAGTGAAACAGCATCAACAGCAAGTTCACTTTCACCTTTAAGAAGGGGAAAGGAACAAATGTCTGATGTGTCTACATCAGATAGTGAAGGAGTTACTTCAAGAATGTCGCTTGAACCTGTGAAACAAATCATTCAGATGACAGGCAATGATAATGAAAGCAGTCAGTCAGTATATGGAAGTGATGTTGAAATTGTAACTAGTGAAGCATCCATTTTAACAAGTGCCACAGCTAGTAATAAGATTAAATTCAATTCAATGGTGAATTATGACTGGGAGCTGAGGTACTACAGAGGATGTCTGATAGCTGTTAGCAGCAAATGTATTGCTTATGCTCTCAGAGGCCGTCAAGGCTATGTTGTGAGGCTTCTCAACCCAGAGACAGCCTCAAGGACACTGATCAAAGGATTTGTTGGTATGATCAGTGAGTTGGCTTTTTCACACAAAGATTCCAACACCTTGGCATGTGTTGATGAGGGTGGTAATGTTTATATCTGGGTTATCCATGAAGAAAATGGTAAACTCGAATACTCAGTAAAACTTCACATTAAACGTCCTGCTAGCACACTGTCTGAGCACCACAGACTAATATGGACTCCATATATGCCTGATGCCGAGGCTGAGGAATCCACTGGAGAAGAAGGACGTCCACTGGCCATCACACATGGAAATCAGGTGGAGGTAATAGATATTGATTCATTGACTGAATGGTGTGGAAGAACAGAAGTGTCCATCGATGAAATACAACAAGGAGAAGGATATTTGGAAATCAAAGATGGGCACACCAAGCCGATCTCAGAAGGAGCTCTATCACCAGATGGGTCAGTGCTAGCGACAGCCAGTGAGGACGGTCACATCAAGTTTTGGCAGTTGTCTGACAAAGTAGAGTGCATGCATGAATTCCAGCCCCATGGTGGCTTGCCACTGTCCTGTATGATTTTTACTGATAATCAGACTTCACAAGATAAAGATCTTCCAATGTGGAGATTTTTAATCACAGGCGCTGAATTCAACAGAGAGATTAAAATTTACGTCTCCAGATGTTCCAAGCTCCAGCTCTTTCCATCGCTCATTCCTAAAGTGAACTTGGATCTCTCAGCTTCATATTTGGTAATTTCAGATGTTCTCAAAAAGGTTCTTTATGTACTTATGTTCCATCAAGACATTGAAGAAGGTCAAGCACATGTCACTTCAGTGGCAGAGTTTCTTCTCACACAACCATTACTAAGTTTTGTTGTTGGTCAAGTCAAGCTGTTCAAACTAAAATCACATAGAGAGCAAAATGGGCAGGAAAATGGAGAAAGCAATGATGAGGATGATATTCACTCCACGCATGTCGGGCTGGAAGAACTAGCTGCTGGAGATGAAAAAGGAAAGAAATATGGTGTTCAGCTGCAGCTGTTTTGCATTCAAACCAAGGCAATGCAAGAGCTCCTGGTACATTTCCAGCCCGAGCCATCTGTCCCACCACCTACACCATCAACTCTGTCATCACTTACAACTGTAGCAGGTCAATCTGTTATACATGATGCCTTGTCTGACTTAAGTGGGATAGATACTGAAACAGAAGCAAGTACAGATGTCGAGGATCCTGATGAGAGTACAGATGAACCTTTCCCAACCAGAGCTAAACTAATCACACCAGAGGCCTTCACCAACACTGCATCCAGGGGCTCACCCCGCCCTGAAGCACTTGGCAGCAGTGGTGGTAGTAGTGTCACTATGGTTTCTGGACTGAATAACTCGCAGGCATCAGTTGACGAGCTTCTGGGTTCATCAGTGTCGTCAAGACTGTCTGACACTACTGTCAGATCAAGTAATTCAGCCACACCTCATGGGTCTTTCATTCATGACAGTGGTCTTCTAACACCAACATCCTTACCCCTCCCCCCATCACCAACTATAACACAGGCGCCTGATCCAAGTGCAATTCCTATTCCAAATTTCCGGTCTAGTCCTCGTGCAGTGTCAGTTCAAAATGAGCCAAGTCCGATATCATCAAGTCATGAGCCTTTAGTGCCTGTTACAAACACTGAAACTCTAGCTTCGGCTTATGGTTCGATAAACAGATTTGTAGAGAATGGTTCAAGTGGTTCAAAGAACCCTTCTCTCAATGAAAAGAGCAGATCCGGCAGTCCTGGCAGTGCAGAAAGAGATATTGAAGTATCCATTGATGACGATGCTAAGGACACAGGTGAAGAAGAGTTACCTGAATCTCAAAAATCTGAGGCGGAAACACAAGAGGAAGTAAATGAACGCGACAGGAAATCCAGCTCAGGATCCAGTACAAGTGAAAGTTTGAGACCAATGTCCGCTCACGCAGAAGGAAATCTTATATGTTTAGAAGATATCGGCAAGGGTAAAGGTGATGTTGTGCAAGTAGATGGGGAAGACATGTTCACAGAAGGGAATCTGTTAGAGCAGTGGGGAATGAACGTCGATGATGAAGTTGTTCCAACTGGACGAGAAAGTCCCGAGTCAGCACATGCACTTCCTGTTGGTACACCAATAGAATCCAGTGGAGGAAGAAAGCGACCTTCCTCACTCTCAAGTTTTGTTTCCACACCTGTAACTGCAATGGATATTCCTCCACAGCAAGTCCAAGTTGCGATGGATGGTAGTATCTTGACATCACTTGGAGAACTCCTGAGTTTGGTGAAGTCACAACAGAAGGACATCAGTGAACTTCGTCAGCAACTGGACTTGTACCAGACTGATCAACAGCAGAAGATGACAGCAGTAGTGCATGAAGTGCAGATGGTCGAGGAGAGAGTATCAACCAGATTGGGAAGTACTCTGGCTGAGTTTTCCAAGGATGAATCTCAGCGTCTTGACAAAGCTCTGCGAGAGAAACACTCAGGAGATAAGAAAAGACACGAACAGCTGCAGAGTACCCTGTCGCAAACCCTTACTACCACCCTGTCAGGAAAATTAGACAAAGCCGTCAAGGCAGAAGTGAAGAATGCAGTGGTACCGTCAGTACAGAAAGTATTGAACTCTCTGCAGGAACAGCTCAACACAACATTGGCACAGAAACTAACCGCTGCTGATGCTGTTTTGAAGGAGAGTATTGCTAAAATGGTGAAGAGTAAGGGAGTGGTAGATGCTATTGGTGGGGCTGCAGCAAGTGCGCTTCAGGGACCTATTCAGGTGACTTACCGCGAGGCATTCCAGAGCACCATCTTGCCATCATTCGAGAGGGCATGCCAGAACATGTTCCAACAAATCAACGACTCATTTAATAAGGGAACTCAACAATACCTGCATCAGGTTACAACTGCTCTGGATAACCGAAGAAGAGAAGAGAAAGAATCTCTAGACCCTGTAATGCGACAGCTGGAATCACAGACACAGTCATTCCAGGCAATGACAGAGAGGCTTTCATCAAACATTATGGCTGACTTTGAAGTCATGTTACAGAAACAATTGGCATCATCAATAGAAGGTTTACGCGAGGAGATTTTCTCACGGCTGTTGTCAGAGGTCTTAGCTTCAGTCCAAGACTCAGTTCAAAAGGAAATGGGATTGGGCTTGGAAGGCCTACGTCAACAGTTGAGTGACATGATAGCCTCATCAGGAGAAAGCACTTCACAACAGGCTCCTGATATAGCTCGTACTCAGGTTGTAGTTTCCAGGCTGCTGGAATCTGGACAAGTGGGTTCAGCATTCCAAGAGGCCCTGACAGCAGCAGATCTAAACGTTGTGATGTACGTGTGTGAAAATGTGGATGTGGAGAATGTGTTTTCTCAGACACCTTGTCCTTTATCACAACCAGTCTTACTGTCTCTAATACAACAACTGTCTGTGGATCTCACCATCAACACAGAGCTCAAGCACAAGTACATTGAAGAGGCTCTCATGTCCCTGGACACGCATGATGATGTCACAAGAGAACACATGCCAGGAGTTCTGGAAGGATTATGCCAACAACTTCAATCTGCTATCCAAGAAGCATCAGGTCCCATGCAACGTTCTCTAAAGATGTTACAAATGGCAGCAAGGTCACTTCTTAGATAA

Transcript

OS493_018700-T1

Protein

Gene family

Gene family	Subfamily
Ubiquitin Family	UBD\|Other\|Beta-prp

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF16529	Ge1_WD40	WD40 region of Ge1, enhancer of mRNA-decapping protein	Repeat	Interproscan
PF21289	EDC4_C	Enhancer of mRNA-decapping protein 4, C-terminal	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001680	Repeat	WD40 repeat	Interproscan
IPR015943	Homologous_superfamily	WD40/YVTN repeat-like-containing domain superfamily	Interproscan
IPR032401	Domain	Enhancer of mRNA-decapping protein 4, WD40 repeat region	Interproscan
IPR036322	Homologous_superfamily	WD40-repeat-containing domain superfamily	Interproscan
IPR044938	Homologous_superfamily	Enhancer of mRNA-decapping protein 4, conserved C-terminal domain superfamily	Interproscan
IPR045152	Family	Enhancer of mRNA-decapping protein 4-like	Interproscan
IPR049404	Domain	Enhancer of mRNA-decapping protein 4, C-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR15598	ENHANCER OF MRNA-DECAPPING PROTEIN 4	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000932	Cellular Component	P-body	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0031087	Biological Process	deadenylation-independent decapping of nuclear-transcribed mRNA	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for OS493_018700-T1 global RNA-seq network