Gene detail

Detailed information of OS493_018434-T1 in Lophelia pertusa Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
OS493_018434-T1	PROTEIN MONO-ADP-RIBOSYLTRANSFERASE PARP4	scaffold_61	661741	679745	+

Gene Structure

More details in Jbrowse Sequence

CDS

OS493_018434-T1

ATGTATAAGTTCTCATCACATCATTGTTTCAGGAACCAGATTCCACTGGCAGTATTGCCTTGTTTCAATGCTCTGGAGCTACATGTCATTCCTCCACATGTTCCGTGCACTGGCTCAAGATATCGCATATTTACACAGCTTGGGAACCTTGTAGGATTACGGCAAGGTGACCAAGGAACCAAGGAATGCAGATACTTTGAGAATGTGGGAGAAGCACTAGAGGCTTATACTGCTCTGTATGATCAGCATCTTTACAGCTTGACAAGAGTGGAGTCAACACTGTCACAAAAGATTGGTTCTGATAAAATGCAGATGACAGCCTGTTCTTCTTTTGAAGATTCTGCAATCTCTCTAGAAGTTGCAAACCTTATTGATTCAATCTGGAATGAAGCGACAGGCAGTCTCACAGACATTCTTGCCGTTCCTGTTGACTCCATTAAGCTGGAGGATGTAGAGAAAGCTGAAGCAATTTTGCTCTTACTTAGAAAATCGTTGGATGCTGATGAAGGGTTCAGTGCAATAAACAAACTCTCTGATGAGTTCTTCTCTGTTATTCCTCACAAGAACAGAGGACGAGGAATAACGTCAAGGCATCTTATTGCACAAAAGCAAGACTTATGTCAGCTCATCAAAGACATGGTTAGTATTGATGAGTCTACAAACTGGTCAACAAGGAGTAGTGTCTATGGCAAGTACAGGGCACTGAAGACACACATTGAATGTTTAAAACATGACAGCAGTGAGTTTAGAACGATCCAAGAGCTTGTCAGTGCAAGTGAAACAGGTCCTTCCAAGATCGATGTACTCAATGTTTTCTCCATTCATCGTCCAGTGGAAGAAGGTTCTTTTTCTCATGACATTGGAAATAAAACTCTTCTTTTCCACTCATCAAAGTTGACAAACTTTGTTGGTATACTTTTAAGAGGACTTCTGATGCCCAAAATTGTTGTAGATGACTTTGGTGGCCAACGGTCAGATGCTGGAATGTTAGGGAGTGGAATTTATTTTGCCAGTTCTGCGAGCACAAGTGCCAAATATTCGGCTCCTGGAAGCAAGGGAACAAGGCTTATGCTTGTTAACGAGGTCGCCTTGGGAAGTATCAAGGAGTTCAGGACATTTTCCATGGAATTGACGTCACCTCCACGTGGTTACAACAGCTGTCATGGATTGATGAGCACAGAGGATGAGCCTTCTGAATTTAAGGACGATGAATATGCCATCTACAGTGGTAACCAGCAGAAAATAAGATATCTGGTGGAATTTGTTTTACCTGGCGATAAAGTTCTTCCCAGAGATGACATCTCTCTTGACAGTGGTTTTTCAGATTATGAAATAGAAGATGTTCCAGAAGACACCAGTGTGGACCTAACGGATGTGATGTCCGTTGTGGATCCTCTGACAAAAGTCGAGGCAGGATTGAAGGGGACTGGAGACAAGCCTATCCCGCTACAGTCTGTTCACATCAGGGCCAGGTTGCTGGATCTTGCTGCACAGGTGATAGTCTTCCAAGCGTACAAAAACACCAGTACGACTCCCATAGAAGCTAAGTACGTTTTTCCTTTGGACGACATGGCCGCAGTTTGTGGTTTCGAGGCGTTCATCAACGGCAAACATATCGTGGGTGAAGTGAAGGAGAAAGAACAGGCCCATAAGGAGTATCGGGAAGCCATCAGCCAGGGGCATGGCGCCTACCTCATGGACGAAGAAACTCCGGATGTGTTCACTGTTAGCGTAGGAAACCTTCCTCCCGGGGCCCAAGTGTTCATCAAGATAACATACGTCACTGAACTTATGGTGGACAGGGAACACATTTGCTTCTCTCTCCCAGGCTCCGTGGCGCCATGGACACGTGACAAGGCCTTGGAGGAAGTTACTCAGACTGATGTTGATACAGTGACGATCGACGATAATTTACCGAAGGAACTGTATGATGTTTCCGTGGAAATGTCTGTAGAGATGCCGTTTGAGATTCGCTCACTGGAATCTCCTTCTCATGTAATTAGAACCAAGCGGACAGCTACCAAAGCAGTGGTATTACTGGAGCGTGGTCAGCCTCTAGGGGATGGTTTCCAACTTCTGATTGGTCTAGCAGAGATTCACGTACCCCGGATGTGGGTTGAACGCCACGTCAGCAAGCCAGATAGTCAGGCATGTATGCTGACCTTCTACCCCGAGTTCGAGGCGGAAACTCCTCCAGAAGTTGAAGTTGTATTTTTGCTTGATCTTTCCTGTTCAATGAAGGGTTCTCCCTTTGAAGAAGCCAAGAAAATATTGTTGATGTGCCTCAGTCATATGAAGAAGGATTGGACGTTTAACATACTCGTGTTTGGAAGCATTTCTAGCCAGTAG

Transcript

OS493_018434-T1

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00644	PARP	Poly(ADP-ribose) polymerase catalytic domain	Family	Interproscan
PF02877	PARP_reg	Poly(ADP-ribose) polymerase, regulatory domain	Domain	Interproscan
PF08487	VIT	Vault protein inter-alpha-trypsin domain	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR004102	Domain	Poly(ADP-ribose) polymerase, regulatory domain	Interproscan
IPR012317	Domain	Poly(ADP-ribose) polymerase, catalytic domain	Interproscan
IPR013694	Domain	VIT domain	Interproscan
IPR031273	Family	Protein mono-ADP-ribosyltransferase PARP4	Interproscan
IPR036465	Homologous_superfamily	von Willebrand factor A-like domain superfamily	Interproscan
IPR036616	Homologous_superfamily	Poly(ADP-ribose) polymerase, regulatory domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46530	PROTEIN MONO-ADP-RIBOSYLTRANSFERASE PARP4	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003950	Molecular Function	NAD+-protein poly-ADP-ribosyltransferase activity	Interproscan
GO:0005737	Cellular Component	cytoplasm	Interproscan
GO:0140289	Biological Process	obsolete protein mono-ADP-ribosylation	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for OS493_018434-T1 global RNA-seq network