Detailed information of OS493_018342-T1 in Lophelia pertusa

Genomic Location: scaffold_60:1810509...1811825
NR annotation: KAJ7333166.1, Nuclear cap-binding protein subunit 2 [Desmophyllum pertusum]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
Q177H0Nuclear cap-binding protein subunit 2 OS=Aedes aegypti OX=7159 GN=Cbp20 PE=3 SV=1
Q7QCB6Nuclear cap-binding protein subunit 2 OS=Anopheles gambiae OX=7165 GN=Cbp20 PE=3 SV=3
Q1HE01Nuclear cap-binding protein subunit 2 OS=Bombyx mori OX=7091 PE=2 SV=1

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00076RRM_1RNA recognition motifDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR034148DomainNCBP2, RNA recognition motifInterproscan
IPR000504DomainRNA recognition motif domainInterproscan
IPR027157FamilyNuclear cap-binding protein subunit 2Interproscan
IPR035979Homologous_superfamilyRNA-binding domain superfamilyInterproscan
IPR012677Homologous_superfamilyNucleotide-binding alpha-beta plait domain superfamilyInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR1884720 KD NUCLEAR CAP BINDING PROTEINInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0003723Molecular FunctionRNA bindingInterproscan
GO:0000339Molecular FunctionRNA cap bindingInterproscan
GO:0000398Biological ProcessmRNA splicing, via spliceosomeInterproscan
GO:0005846Cellular Componentnuclear cap binding complexInterproscan
GO:0045292Biological ProcessmRNA cis splicing, via spliceosomeInterproscan
GO:0003676Molecular Functionnucleic acid bindingInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K12883NCBP2, CBP20; nuclear cap-binding protein subunit 2-Spliceosomeko03041deepkoala

Expression pattern
 Expression trend for OS493_018342-T1 global co-expression network
TOP