Detailed information of OS493_017897-T1 in Lophelia pertusa

Genomic Location: scaffold_58:657988...659126
NR annotation: KAJ7372626.1, Pre-mRNA-splicing factor [Desmophyllum pertusum]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
Q6T412Pre-mRNA-splicing factor CWC2 OS=Leptosphaeria maculans OX=5022 GN=CWC2 PE=3 SV=1
Q5BB35Pre-mRNA-splicing factor cwc2 OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) OX=227321 GN=cwc2 PE=3 SV=1
Q54PH5Pre-mRNA-splicing factor cwc2 OS=Dictyostelium discoideum OX=44689 GN=cwc2 PE=3 SV=1

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF16131TorusTorus domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR032297DomainTorus domainInterproscan
IPR039171FamilyPre-mRNA-splicing factor Cwc2/Slt11Interproscan
IPR000571DomainZinc finger, CCCH-typeInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR14089PRE-MRNA-SPLICING FACTOR RBM22Interproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0000974Cellular ComponentPrp19 complexInterproscan
GO:0003723Molecular FunctionRNA bindingInterproscan
GO:0017070Molecular FunctionU6 snRNA bindingInterproscan
GO:0036002Molecular Functionpre-mRNA bindingInterproscan
GO:0071006Cellular ComponentU2-type catalytic step 1 spliceosomeInterproscan
GO:0071007Cellular ComponentU2-type catalytic step 2 spliceosomeInterproscan
GO:0046872Molecular Functionmetal ion bindingInterproscan

Expression pattern
 Expression trend for OS493_017897-T1 global co-expression network
TOP