Detailed information of OS493_017727-T1 in Lophelia pertusa

Genomic Location: scaffold_57:1293728...1308831
NR annotation: KAJ7379220.1, hypothetical protein OS493_017727 [Desmophyllum pertusum]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
P53621Coatomer subunit alpha OS=Homo sapiens OX=9606 GN=COPA PE=1 SV=2
Q8CIE6Coatomer subunit alpha OS=Mus musculus OX=10090 GN=Copa PE=1 SV=2
Q27954Coatomer subunit alpha OS=Bos taurus OX=9913 GN=COPA PE=1 SV=1
 Gene family
Gene familySubfamily
Ubiquitin FamilyUBD|Other|Beta-prp
Ubiquitin FamilyE3|E3 adaptor Cullin RING|CDC20
Ubiquitin FamilyE3|E3 adaptor Cullin RING|DWD

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF04053Coatomer_WDADCoatomer WD associated region RepeatInterproscan
PF00400WD40WD domain, G-beta repeatRepeatInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR001680RepeatWD40 repeatInterproscan
IPR011048Homologous_superfamilyCytochrome cd1-nitrite reductase-like, haem d1 domain superfamilyInterproscan
IPR050844FamilyCoatomer complex subunitInterproscan
IPR020472RepeatG-protein beta WD-40 repeatInterproscan
IPR006692DomainCoatomer, WD associated regionInterproscan
IPR047312DomainCoatomer subunit alpha, WD Associated RegionInterproscan
IPR019775Conserved_siteWD40 repeat, conserved siteInterproscan
IPR036322Homologous_superfamilyWD40-repeat-containing domain superfamilyInterproscan
IPR015943Homologous_superfamilyWD40/YVTN repeat-like-containing domain superfamilyInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR19876COATOMERInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0005515Molecular Functionprotein bindingInterproscan
GO:0006886Biological Processintracellular protein transportInterproscan
GO:0006888Biological Processendoplasmic reticulum to Golgi vesicle-mediated transportInterproscan
GO:0006890Biological Processretrograde vesicle-mediated transport, Golgi to endoplasmic reticulumInterproscan
GO:0006891Biological Processintra-Golgi vesicle-mediated transportInterproscan
GO:0030126Cellular ComponentCOPI vesicle coatInterproscan
GO:0005198Molecular Functionstructural molecule activityInterproscan
GO:0016192Biological Processvesicle-mediated transportInterproscan
GO:0030117Cellular Componentmembrane coatInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K05236COPA, RET1; coatomer subunit alpha-Exosomeko04147deepkoala

Expression pattern
 Expression trend for OS493_017727-T1 global co-expression network
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