Detailed information of OS493_017452-T1 in Lophelia pertusa

Genomic Location: scaffold_56:289019...301915
NR annotation: KAJ7385087.1, PAB-dependent poly(A)-specific ribonuclease subunit 3 [Desmophyllum pertusum]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
A1L1C7PAN2-PAN3 deadenylation complex subunit pan3 OS=Xenopus tropicalis OX=8364 GN=pan3 PE=2 SV=1
Q640Q5PAN2-PAN3 deadenylation complex subunit Pan3 OS=Mus musculus OX=10090 GN=Pan3 PE=1 SV=4
Q58A45PAN2-PAN3 deadenylation complex subunit PAN3 OS=Homo sapiens OX=9606 GN=PAN3 PE=1 SV=3

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00642zf-CCCHZinc finger C-x8-C-x5-C-x3-H type (and similar)FamilyInterproscan
PF18101Pan3_PKPan3 Pseudokinase domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR000571DomainZinc finger, CCCH-typeInterproscan
IPR041332DomainPan3 pseudokinase domainInterproscan
IPR030844FamilyPAN2-PAN3 deadenylation complex subunit PAN3Interproscan
IPR036855Homologous_superfamilyZinc finger, CCCH-type superfamilyInterproscan
IPR011009Homologous_superfamilyProtein kinase-like domain superfamilyInterproscan
IPR000719DomainProtein kinase domainInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR12272DEADENYLATION COMPLEX SUBUNIT PAN3Interproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0046872Molecular Functionmetal ion bindingInterproscan
GO:0000289Biological Processnuclear-transcribed mRNA poly(A) tail shorteningInterproscan
GO:0000932Cellular ComponentP-bodyInterproscan
GO:0003723Molecular FunctionRNA bindingInterproscan
GO:0006397Biological ProcessmRNA processingInterproscan
GO:0008143Molecular Functionpoly(A) bindingInterproscan
GO:0031251Cellular ComponentPAN complexInterproscan
GO:0004672Molecular Functionprotein kinase activityInterproscan
GO:0005524Molecular FunctionATP bindingInterproscan
GO:0006468Biological Processprotein phosphorylationInterproscan

Expression pattern
 Expression trend for OS493_017452-T1 global co-expression network
TOP