Detailed information of OS493_017446-T1 in Lophelia pertusa

Genomic Location: scaffold_56:229364...233472
NR annotation: KAJ7385081.1, Sequestosome-1 [Desmophyllum pertusum]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
O08623Sequestosome-1 OS=Rattus norvegicus OX=10116 GN=Sqstm1 PE=1 SV=1
Q64337Sequestosome-1 OS=Mus musculus OX=10090 GN=Sqstm1 PE=1 SV=1
Q13501Sequestosome-1 OS=Homo sapiens OX=9606 GN=SQSTM1 PE=1 SV=1
 Gene family
Gene familySubfamily
Ubiquitin FamilyULD|UFD|PB1

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF16577UBA_5UBA domainDomainInterproscan
PF00569ZZZinc finger, ZZ typeDomainInterproscan
PF00564PB1PB1 domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR000433DomainZinc finger, ZZ-typeInterproscan
IPR052260FamilyAutophagy Receptor and Signaling RegulatorInterproscan
IPR033741DomainSequestosome-1, UBA domainInterproscan
IPR034866DomainSequestosome-1, PB1 domainInterproscan
IPR000270DomainPB1 domainInterproscan
IPR009060Homologous_superfamilyUBA-like superfamilyInterproscan
IPR043145Homologous_superfamilyZinc finger, ZZ-type superfamilyInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR15090SEQUESTOSOME 1-RELATEDInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0008270Molecular Functionzinc ion bindingInterproscan
GO:0000423Biological ProcessmitophagyInterproscan
GO:0005080Molecular Functionprotein kinase C bindingInterproscan
GO:0007032Biological Processendosome organizationInterproscan
GO:0016235Cellular ComponentaggresomeInterproscan
GO:0035973Biological ProcessaggrephagyInterproscan
GO:0044753Cellular ComponentamphisomeInterproscan
GO:0070530Molecular FunctionK63-linked polyubiquitin modification-dependent protein bindingInterproscan
GO:0005515Molecular Functionprotein bindingInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K14381SQSTM1; sequestosome 1-Exosomeko04147deepkoala

Expression pattern
 Expression trend for OS493_017446-T1 global co-expression network
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