Detailed information of OS493_016881-T1 in Lophelia pertusa

Genomic Location: scaffold_53:668491...678179
NR annotation: KAJ7360252.1, Rab5 GDP/GTP exchange factor [Desmophyllum pertusum]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
O18973Rab5 GDP/GTP exchange factor OS=Bos taurus OX=9913 GN=RABGEF1 PE=1 SV=1
Q9UJ41Rab5 GDP/GTP exchange factor OS=Homo sapiens OX=9606 GN=RABGEF1 PE=1 SV=3
Q9JM13Rab5 GDP/GTP exchange factor OS=Mus musculus OX=10090 GN=Rabgef1 PE=1 SV=1
 Gene family
Gene familySubfamily
Ubiquitin FamilyUBD|ZnF|ZnF_A20

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF02204VPS9Vacuolar sorting protein 9 (VPS9) domainFamilyInterproscan
PF18151DUF5601Domain of unknown function (DUF5601)DomainInterproscan
PF01754zf-A20A20-like zinc fingerFamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR003123DomainVPS9 domainInterproscan
IPR002653DomainZinc finger, A20-typeInterproscan
IPR037191Homologous_superfamilyVPS9 domain superfamilyInterproscan
IPR045046FamilyVacuolar protein sorting-associated protein 9-likeInterproscan
IPR041545DomainRABX5, catalytic core helical domainInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR23101RAB GDP/GTP EXCHANGE FACTORInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0003677Molecular FunctionDNA bindingInterproscan
GO:0008270Molecular Functionzinc ion bindingInterproscan
GO:0005085Molecular Functionguanyl-nucleotide exchange factor activityInterproscan
GO:0005829Cellular ComponentcytosolInterproscan
GO:0016192Biological Processvesicle-mediated transportInterproscan
GO:0030139Cellular Componentendocytic vesicleInterproscan
GO:0031267Molecular Functionsmall GTPase bindingInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K20131RABGEF1; Rab5 GDP/GTP exchange factor-Membrane traffickingko04131deepkoala

Expression pattern
 Expression trend for OS493_016881-T1 global co-expression network
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