Detailed information of OS493_016495-T1 in Lophelia pertusa

Genomic Location: scaffold_50:1997224...2000028
NR annotation: KAJ7385411.1, SMN protein Smn1 [Desmophyllum pertusum]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
Q4R4F8Survival motor neuron protein OS=Macaca fascicularis OX=9541 GN=SMN1 PE=2 SV=1
Q16637Survival motor neuron protein OS=Homo sapiens OX=9606 GN=SMN1 PE=1 SV=1
Q5RE18Survival motor neuron protein OS=Pongo abelii OX=9601 GN=SMN1 PE=2 SV=1

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF06003SMN_TudorSurvival motor neuron protein (SMN), Tudor domainDomainInterproscan
PF20636SMN_G2-BDSurvival Motor Neuron, Gemin2-binding domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR040424FamilySMN complex subunit Smn1Interproscan
IPR010304DomainSurvival motor neuron, Tudor domainInterproscan
IPR047298DomainSurvival motor neuron protein, Tudor domain, eumetazoaInterproscan
IPR002999DomainTudor domainInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR39267SURVIVAL MOTOR NEURON-LIKE PROTEIN 1Interproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0003723Molecular FunctionRNA bindingInterproscan
GO:0005634Cellular ComponentnucleusInterproscan
GO:0005737Cellular ComponentcytoplasmInterproscan
GO:0006397Biological ProcessmRNA processingInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K11587CBX5, HP1A; chromobox protein 5-Chromosome and associated proteinsko03036deepkoala

Expression pattern
 Expression trend for OS493_016495-T1 global co-expression network
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