Detailed information of OS493_016414-T1 in Lophelia pertusa

Genomic Location: scaffold_50:1081822...1088890
NR annotation: KAJ7385337.1, Pre-B-cell leukemia transcription factor 1 [Desmophyllum pertusum]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
P40424Pre-B-cell leukemia transcription factor 1 OS=Homo sapiens OX=9606 GN=PBX1 PE=1 SV=1
P41778Pre-B-cell leukemia transcription factor 1 OS=Mus musculus OX=10090 GN=Pbx1 PE=1 SV=2
P40426Pre-B-cell leukemia transcription factor 3 OS=Homo sapiens OX=9606 GN=PBX3 PE=1 SV=1

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF05920Homeobox_KNHomeobox KN domainFamilyInterproscan
PF03792PBCPBC domainFamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR009057Homologous_superfamilyHomeobox-like domain superfamilyInterproscan
IPR005542DomainPBX, PBC domainInterproscan
IPR017970Conserved_siteHomeobox, conserved siteInterproscan
IPR008422DomainHomeobox KN domainInterproscan
IPR001356DomainHomeobox domainInterproscan
IPR050224FamilyThree Amino acid Loop Extension (TALE) homeoboxInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR11850HOMEOBOX PROTEIN TRANSCRIPTION FACTORSInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0003700Molecular FunctionDNA-binding transcription factor activityInterproscan
GO:0005634Cellular ComponentnucleusInterproscan
GO:0000981Molecular FunctionDNA-binding transcription factor activity, RNA polymerase II-specificInterproscan
GO:0006355Biological Processregulation of DNA-templated transcriptionInterproscan
GO:0003677Molecular FunctionDNA bindingInterproscan
GO:0000978Molecular FunctionRNA polymerase II cis-regulatory region sequence-specific DNA bindingInterproscan
GO:0006357Biological Processregulation of transcription by RNA polymerase IIInterproscan
GO:0009887Biological Processanimal organ morphogenesisInterproscan
GO:0048568Biological Processembryonic organ developmentInterproscan
GO:0048666Biological Processneuron developmentInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K09355PBX1; pre-B-cell leukemia transcription factor 1-Transcription factorsko03000deepkoala

Expression pattern
 Expression trend for OS493_016414-T1 global co-expression network
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