Gene detail

Detailed information of OS493_016335-T1 in Lophelia pertusa Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
OS493_016335-T1	ECTONUCLEOTIDE PYROPHOSPHATASE/PHOSPHODIESTERASE	scaffold_50	349070	354303	+

Gene Structure

More details in Jbrowse Sequence

CDS

OS493_016335-T1

ATGGGAAGACGTTTTCTATGCTCTTTGGACATGGTGGTAGTTTGGACTGTTGTCGTTTCATTTGCAACGTTTGTCATAGCTTCGTCTAAAGTCAACCCCGTGCTACTCGTTTCCATTGATGGATTTGCATGGCAAATCATTGAAGGTAAACTTGCCAACACGCCAAACCTCGACTACATCGCTCGCACAGGCGTCAAATCCAAGTGTATTCGCACAGTAACTCCGAGTTTTACGTGGCCTAATCACCATACATACATGACGGGCCTATACCCGGAGAGCCACGGAATTGTCTCGAATGTGTTCTACGATCCGCTCTACAACGAGTTGTTTATTTATGAGAGCGACTGCTCCAGTTACGACCCGAAGTTCTACAACGATTCCGAACCGATCTGGTTAACCCTTGAAAAGCAGGGAGGAGTCAGTGGGGCTTATTTTTGGCCAGGCTCGGGCGGTTACGAAGATCGGCCGACGTTCTTCGTTAAACCGATTTGCAACGTGAACTGTGAGGCGAAAGACAGAGACGTATCGGCAATAAACTCTTCTTATTCACTTGGCTGTACTTTTAATTACTCCGAGCCGTGGCATTCTAGGATTAACAGAATTGTACAATGGCTTACTTCTGAAAATCCGCCACAGTTTGTTGCTCTTTATATCGAAGAGCCAGATTTTATAGGGCACGAATATGGTGTCAATTCCGAAGAATATTTGCACGAGATTGAGCGAATCGATGGAGAAGTTGTAGGATATCTTTTGGAGAGTTTGCGGGATTCTAACCTACTCGACGAGGTCAACTTATTGTTTGTCACAGATCATGGTATTTCCAATGTATCTGAAGCGAGACAGATTTATCTCGATGATTACATTGATCCTTCACTGTACTTCCTTTCTGAAGCCGGTACTTCAGCTCATATCTGGCCTTTAGTGGGCAAATACCACGAGGTGTACGAAGCCTTAACGCGCATCAAACACCCGCATATCAAAGTATACGAAAAGGAAGATATCCCTGATATATTACACTGGAAAAACAACAGACGTATCCCACCGATATTTGTTGAGCCGGACCTCGGCTGGCAAATGTTCCGGTCGGTACCGGAGGGGTTTCCGAACCCCGTGCCCCTGGTTTACGGAGCACATGGCTGGCCAAGCATACATCGTGAAATGTGGTCGATATTTTTCGCAAGAGGACCTGCATTTCGACAAGGTGTTGAAATGGGGGAGTTTGAGACTGTTGATCTGTACCCTTTGATGTGTCATTTGCTTGGTATAAATCCCCACCCTAATAACGGCTCTTTGATCAACGTGGAAGGGATGCTGAAGAAAACACTCAGAAATGACAGAAATGAAGGAAGAAAATTGACTCCTGCTATTCAGTGTGTGCTCTGGAGTGGAAGAATGGCGTTGTTTGTGAAATCAGGAGACAAATTTGATTACTCTTTCCTTCGCGACGAGGGCGTTCGTTACGGAAATCGTGTTTTGTTCAACAAGATCCCCAAAACGACGAAGATTTTTGAATTCATTCTCGACATTCTGTCGGAGCCTCGGTACTCTTCGATCATTTCATGGGAGGGGACTAACGGACAGTTCGCCATCATACGACCCGACGATGTGGCTTATCTGTGGGGCGAGAGGAATGGCCGAAGAAACATGACATACCAGAAGTTCAGCCGCGCGCTGCGTTATTACTACCACAAGAAGGTCTTGAGCAAAATCCGCGGACGGAAATGCGTGTACAAGTTCAGCTTCCGAGAGCTTGAGAGGCAGTATGGTTATCAAAGCAAAATACCGTTTCCAGTCACAACAGAACCCATAGGTAATGGCGGTTACGAGATTCCACTGGCCACGTGCGATCACTTTCAGCATCCATCGTTTGCCGTCAGTTCTCCAGTGATGGTTGGAATGGCGCCACATGACAGCCAAGGCCTGTCGCATTCACTTTTCTATCCAAATCCAAATCCATATTATTTACCCTATGATTTTAATTTCTAA

Transcript

OS493_016335-T1

Protein

Gene family

Gene family	Subfamily
Transcription Factors Family	ETS

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00178	Ets	Ets-domain	Domain	Interproscan
PF01663	Phosphodiest	Type I phosphodiesterase / nucleotide pyrophosphatase	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000418	Domain	Ets domain	Interproscan
IPR002591	Family	Type I phosphodiesterase/nucleotide pyrophosphatase/phosphate transferase	Interproscan
IPR017850	Homologous_superfamily	Alkaline-phosphatase-like, core domain superfamily	Interproscan
IPR036388	Homologous_superfamily	Winged helix-like DNA-binding domain superfamily	Interproscan
IPR036390	Homologous_superfamily	Winged helix DNA-binding domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10151	ECTONUCLEOTIDE PYROPHOSPHATASE/PHOSPHODIESTERASE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003700	Molecular Function	DNA-binding transcription factor activity	Interproscan
GO:0006355	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0043565	Molecular Function	sequence-specific DNA binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for OS493_016335-T1 global RNA-seq network