Detailed information of OS493_016255-T1 in Lophelia pertusa

Genomic Location: scaffold_49:2156086...2159364
NR annotation: KAJ7391948.1, hypothetical protein OS493_016255 [Desmophyllum pertusum]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
Q8K1J6CCA tRNA nucleotidyltransferase 1, mitochondrial OS=Mus musculus OX=10090 GN=Trnt1 PE=1 SV=1
F6NXI9CCA tRNA nucleotidyltransferase 1, mitochondrial OS=Danio rerio OX=7955 GN=trnt1 PE=2 SV=1
Q96Q11CCA tRNA nucleotidyltransferase 1, mitochondrial OS=Homo sapiens OX=9606 GN=TRNT1 PE=1 SV=2
 Gene family
Gene familySubfamily
Ubiquitin FamilyE3|E3 activity RING|RING

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF13445zf-RING_UBOXRING-type zinc-fingerDomainInterproscan
PF01743PolyA_polPoly A polymerase head domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR001841DomainZinc finger, RING-typeInterproscan
IPR050264FamilyBacterial CCA-adding enzyme type 3 subfamilyInterproscan
IPR011042Homologous_superfamilySix-bladed beta-propeller, TolB-likeInterproscan
IPR027370DomainZinc finger, RING-type, eukaryoticInterproscan
IPR013083Homologous_superfamilyZinc finger, RING/FYVE/PHD-typeInterproscan
IPR011044Homologous_superfamilyQuinoprotein amine dehydrogenase, beta chain-likeInterproscan
IPR043519Homologous_superfamilyNucleotidyltransferase superfamilyInterproscan
IPR017907Conserved_siteZinc finger, RING-type, conserved siteInterproscan
IPR002646DomainPoly A polymerase, head domainInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR46173CCA TRNA NUCLEOTIDYLTRANSFERASE 1, MITOCHONDRIALInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0000049Molecular FunctiontRNA bindingInterproscan
GO:0001680Biological ProcesstRNA 3'-terminal CCA additionInterproscan
GO:0005739Cellular ComponentmitochondrionInterproscan
GO:0008033Biological ProcesstRNA processingInterproscan
GO:1990180Biological Processmitochondrial tRNA 3'-end processingInterproscan
GO:0003723Molecular FunctionRNA bindingInterproscan
GO:0006396Biological ProcessRNA processingInterproscan
GO:0016779Molecular Functionnucleotidyltransferase activityInterproscan

Expression pattern
 Expression trend for OS493_016255-T1 global co-expression network
TOP