Detailed information of OS493_015992-T1 in Lophelia pertusa

Genomic Location: scaffold_48:2332568...2336096
NR annotation: KAJ7333899.1, LIM/homeobox protein Lhx1 [Desmophyllum pertusum]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
P29674LIM/homeobox protein Lhx1 OS=Xenopus laevis OX=8355 GN=lhx1 PE=1 SV=1
Q90476LIM/homeobox protein Lhx1 OS=Danio rerio OX=7955 GN=lhx1a PE=2 SV=1
P37137LIM/homeobox protein Lhx5 OS=Xenopus laevis OX=8355 GN=lhx5 PE=1 SV=2

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00046HomeodomainHomeodomainDomainInterproscan
PF00412LIMLIM domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR049618DomainLhx1/5, LIM domain 1Interproscan
IPR001356DomainHomeobox domainInterproscan
IPR001781DomainZinc finger, LIM-typeInterproscan
IPR017970Conserved_siteHomeobox, conserved siteInterproscan
IPR049619DomainLhx1/5, LIM domain 2Interproscan
IPR050453FamilyLIM/homeobox transcription factorsInterproscan
IPR009057Homologous_superfamilyHomeobox-like domain superfamilyInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR24208LIM/HOMEOBOX PROTEIN LHXInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0008270Molecular Functionzinc ion bindingInterproscan
GO:0003677Molecular FunctionDNA bindingInterproscan
GO:0000981Molecular FunctionDNA-binding transcription factor activity, RNA polymerase II-specificInterproscan
GO:0006355Biological Processregulation of DNA-templated transcriptionInterproscan
GO:0000977Molecular FunctionRNA polymerase II transcription regulatory region sequence-specific DNA bindingInterproscan
GO:0005634Cellular ComponentnucleusInterproscan
GO:0006357Biological Processregulation of transcription by RNA polymerase IIInterproscan
GO:0030182Biological Processneuron differentiationInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K09372LHX1; LIM homeobox protein 1-Transcription factorsko03000deepkoala

Expression pattern
 Expression trend for OS493_015992-T1 global co-expression network
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