Gene detail

Detailed information of OS493_015938-T1 in Lophelia pertusa Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
OS493_015938-T1	MICRORNA PROCESSOR COMPLEX SUBUNIT DGCR8	scaffold_48	1958819	1967036	-

Gene Structure

More details in Jbrowse Sequence

CDS

OS493_015938-T1

ATGCCGACTATTATAGCATCGAAAGCTATCGACCGAAAGAAAATAAGAGCTGTTTTCGAGAACAAGCTAATCTGGCCAAAAATGCAAAATGATACGGAGCAACTATGCACCAGTGGTTTGGATGGTTCGCGTCCCTCGTCAGCTCCAGCAACTGCTGAAGAATCGCTTGAAACAATGACGCTACAAGCAGGAAGAGTGCCGTTGAAAAGGAAGTCCGACGATGAACTGGGGAGCGACCCAAAGCGCCGGCCAGTGACAGAGGAAACTCCATGCAGCGAAGAAGCTAGTGCTACTTTGGCGCCGAATGATGTCACAGAAAATACAGGGACAGAGGAAGAAAACAGAGACGGAGGAAAAAACGAGCCCTTTGAACAAGAACGAAGAGTTATCATTATGAAGGGTAATCTTCCAAAATTAGCATTACCAGATGGCTGGATAGCGCTTAATCACCGAAGTGGTGGAATCATTTATCTTCATAAACCAACTAGAGTTTGCACGTGGTCTCGTCCTTATCACATTGGAGGTGGAAGTGTCAGGAAACATGATGTACCTGTGGCTGCCATTCCATGTCTTCATCAGAAAAGAGGATTGTCCATTGAAAAAGAGAAAATTCAAACTACAAGTTCAGAGAACAGCAGCTCCAGTTCCCTTCCAACAGCAAACCAGGGAGCGTCAATTTTAAATGCGATAAATATGGGTGAGAAGAATGCACCAGAGGGAACTCTAAATGAGGACGCCATTGCAGAAAGCGCGTCTGTTGAAGAAGGACGTGAAATAAGTGGACTGGATGTAATCATGAGCCTAACTGATACATTTGGCGTGACGGAGAAGGATGGCGTGACAGTTGACATGATGGAGAAGGATGGCGCGACAGTTGGCGTGACGGAGAAGGATAGCGTGACAGTTGGCGTGATGGAGAAGGATGGCGTGACATTTGACGTGATGGAGAAGAATGGCATGACAGTTGGCGTGATGGAGAAGGGTGGCGTGACAGTTGGCGTGATGGAGAAGGATGGCGTGACAGTTGGTGTGACGATGAAGAATGGCGTGACAGCAAGGAATGATGCGAGAGTTGTAAATGGTACGATGGAAATAGATGTTGTGACAGAAGGTAATGGTGTGACTGATAGATGTGATGTGACAGACCCAAATAACGTAACGCAACACTCACAAGTTGCAGAGAAGTCTATTTCTTGTAAAAAACAAGACAGTTCAGGAAAGGAGGCTGTTTCCAAAGAAGATCCCATTGGCAATGGTAGCACCTCAGACTTAGTAGCTGCTGGGGTACTGGGTACTTACCTGTCAGCTATATGGGAGTTTGAAGCTCTTACCTGTGATCAAGAACGGAATGCCGTGATCGCCCAACCACAACCTGTAGACACTCTGGAACTGCCGCCATCTTTGGAATGTCAGCCATACTCGGTGAAAGGCACAGAAAACGGGAAACAGCTACTAGCCGGCAAAGAGTGTTTGCTGAATGCTGGCGGGAAAACACCAGTGGCAATCTTACACGAATACTGTCAGCGGGTGATGAAGACAAAACCGGTCTATCTGTCCAGTGAATGTGAGAATGCGGACACGCCCTTTTTGGCCGAGGTGCAGATAGGTGAAATAAAATATGGGTCAGGAATCGGCTCGAGTAAGAAACTTGCCCGACAGATCGCTGCTGAAGGCACTCTGGAGGTGCTGTTGCCTGGTGTTTACAAGAAAGTACGTGATTACCAGATTTCAGAAGAAGAGATACAGTTTTTTGACAAAGTCGACATCTTGGATCCTCGGATTCCAGAGTTTTGTTCAAAGACAACCCTCCCCAATCCATCACAAATCCTCGAGGAGTGTTTAAAGAGAAACCAAGGCATTTGTTCATCTCCGATCCAGTTCACGACTCTATGCGGACAGGACAGAAGTCTGTCATTTCACATAACATGCGGCAAACACACAGCAACGGGTCCTTGTAAAAACAAACGCATTGGCAAGCAGCTCGCCTCACAACAAATCCTCAAGAAACTCCATCCTCATCTCGAAAAGTGGGGAGCGCTGATTCGAATCTACTGTGACAGACCTACGGGCTCGATAAAAAGTACAAGAAAGATGACAGTACATCTACCAGTGAGCGAGAAGAATACAGCTCCAATATGCTGCAGAATAAACGATTTGCTTGCGCGTCTCAAAAGCGAAATGAGAAAACTTCATTTTGAGGTCAAGCAAACGAAAAGAATGGACGGCACAAATAACACGACGAAGCCAGTGTTCACCGTGGATCTCTAA

Transcript

OS493_015938-T1

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00035	dsrm	Double-stranded RNA binding motif	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001202	Domain	WW domain	Interproscan
IPR014720	Domain	Double-stranded RNA-binding domain	Interproscan
IPR036020	Homologous_superfamily	WW domain superfamily	Interproscan
IPR040375	Family	Microprocessor complex subunit DGCR8	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13482	MICRORNA PROCESSOR COMPLEX SUBUNIT DGCR8	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0003725	Molecular Function	double-stranded RNA binding	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0020037	Molecular Function	heme binding	Interproscan
GO:0031053	Biological Process	primary miRNA processing	Interproscan
GO:0042802	Molecular Function	identical protein binding	Interproscan
GO:0070877	Cellular Component	microprocessor complex	Interproscan
GO:0070878	Molecular Function	primary miRNA binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for OS493_015938-T1 global RNA-seq network