Gene detail

Detailed information of OS493_015797-T1 in Lophelia pertusa Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
OS493_015797-T1	BASIGIN RELATED	scaffold_48	596773	606577	-

Gene Structure

More details in Jbrowse Sequence

CDS

OS493_015797-T1

ATGGATGGTCTAGGGGATTTGAGGTTCAACAACATATCAATAATTGGAGATGGGGACTTGGCTGGACTCCGACACCTTACTACACTATTTCTTAGCGGTAATAACATTCACAGAATCGAACCCGAGGCCTTCAGCGGGTTGTCTTCACTCAAATATCTATATTTGTTCAATAATAAGCTAAGACGGATACACGAGAACGCGTTTAGTGGCCTCAACTTTCTTGAACAGTTATATCTTTACTTAAATGAAATAGAAGACATTCCCGCAGCTACGTTCAGTGACCTCACTGCTCTTGAAAGATTATATCTACATCACAACAGACTGAAGTCTGTTCCAAGAGGACTGTTCAACAATGTTCCTTCACTGAGAAGGCTCCGTCTCGATTCCAACCCTCTGAACTGCACGTGCGACATTCTGTGGTTAGCCAGGTTGCTCAAGAAGACACCAAACACCGAGACAGCAGCTACCTGCGCCGAGCCCGCGAACTTGCGAGGAAAAGCGTTAGTACGACTCACGCCTGAGGACTTCAACTGCATACCACCAACGTTTGTGAAAACACCGACCAGCATTGAAGTGTCCGTCAGGGATCGCGAAGTGCTGTTCAGGTGCCTAGCCACAGGCTTCCCAACACCGACTATAACATGGCGGAAAGACGGCGAGCCTCTACAGGCGGACACGCGTCATGTCATGCGCGAGAGCGGCGCGCTCAACATTATCGATCCCAAGTTTGATGATGAAGGCAGTTACGAGTGCGTGGCACAGAACTCTGCCGGGGAGATCGTCAGCAAAGCGGCCTTAAATTACTATGGAATCGAAGCTCCACCGTTCCTTATCCAGTATCCTCATTCTAAAGTACAGTCAATAGAAAAAAACTCCGTGACTCTTACCTGCCGCGCCCGCGGTAACCCTAGGCCTATTGTCGAATGGAGTAAAGAAGGTCTACCGCTGACCTTGGATCCTCATTATGAAGTCATGCCATCCGGGGACTTGTATATCAGGCAGGTGCGCATGGGTGACCATGGCATGTACAGATGTCGTGCGACCAACAGGGCTGGGGGCGTGGCAGCTTCTACCAGGTTAATTGTAACAGCTCCTCCAAAGTTTACCCTGAGACCCGAAAGCACCGAGGTACTGGAAGGGAGCACAGCCTCGCTTCACTGCCGAGTGAGCGGTTACCCAGTACCAGCTATCGCTTGGACCAAGGACGGCGACCGGCTGCCATCTCGGGATCGTCACGTGGTTCTACCATCCGGGACTTTAAGAGTTCTGTTTGCTTCGCCGGATGACCAGGGACAGTACGAGTGCCAAGCAATAAACGTGATCGGAGTGAGACTGGCAAGAGCGTTTCTGACAGTGAAACCACGAGTACCTCCCTCCATCGTGGAGTCACCCACAGACATCATAGTCTCCGCTGGTCAAACAGTTCAAATTCGCTGCTCGGCTTACGGTGCTCCTGAGCCAATCATAACATGGATAAAAAACAACGTGCACATCACAGAGGCAAACAGATACTCGGTTAGCAAATCCGGGACCCTGAGAATCCGGGATGTTGGAAAGGCAGACGAAGGGCGGTACGAATGCGCGGCTCGAAACAGTATTGGTGCAGCCTCCGCGCAGATGACGCTAACAGTGCAAATCTCCTCGGAAGAAAACCGGATTGGCATTGACACTATCAATAAAACGGTGGCTCTAGCCAAAGAAAACGTGGACAGAGCTCTAAACGCCAGCATAAAGAAGCTGTTTGCCTCGTCACGGCCGAGGAAACCCAGTGATCTTCACGCCCTCTTCCGCTTTCCATCTCCTGCCGCGCAGCAAATCGCACGAGCCGCGGAGATCTTCGAACGGACTATCCAGTTAGTCCACGAGCACGTCAAAGAAATGGACAGAGTGAACGTTAGCAACGACAAGTACAACTTCTTCCACCTGTTGTCCCCGGCGCATGTGAATGTCATCGCCAACCTGTCGGGCTGCAGCGCTCATCGCCGGATCAACAACTGCTCCTCTATGTGCTTCCACCACAAGTACCGCACAATCGACGGCACGTGCAACAACCTGCAGCATTCCATGTGGGGCGCGTCTCTGACGCCGTTTAAGCGCCTGCTGAGCCCCGTGTACGAGAACGGTTATAACACGCCCGTGGGATGGCAGGACACGTACGGAAGGCCTAGCGCGCGCCTCGTATCCACGGAACTGATTTCATCCAAGGAAGTGAGCGACGATGAACGCTACACGCACATGTTGATGCAATGGGGGCAGTTCCTTGATCACGATATCGACTTCATTGTGAGCAGTTTGAGTACGTTGAGATTTAGTGACGGTTTGGATTGTACAAAGCAGTACAGTGTTTGTGATAATCAACCCCCGTGCTTTCCTATTCCAATCCCAGCCAACGATCCCCGCATTAAGGGACACGGGTGCATGCAGTTCACTCGCTCGAGCGCGGTCTGTGGTACTGGCACAACCTCAGTTTTTTTCAGCGCGGTGACTCCACGGGAACAGATGAATCAAATCACTTCTTACATCGATGGATCAGTTGTGTACGGCTCATCTAAAGAAGAGGTACTGAACCTGCGAGACTTAGATAGTAGAGGATTGCTCAAATCAAATTCCAGCATCGGCAGCGGAAAGCCATTGCTTCCTTTCAACCGCGACACGCCCATTGATTGTCTACAAGCAAAACGACAGCCCTGTCCCGTGTTTCCTTGCGGGGGATTTCCGCGCCAACGAACAGCTTGGTCTGCTGTCGATGCACACGTTATGGATGCGCGAACACAACCGCATCGCGCAGGAACTAGGAGATTTGAATCCCCACTGGGACGGGGACAAAGTGTACCACGAGGCACGTAA

Transcript

OS493_015797-T1

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF03098	An_peroxidase	Animal haem peroxidase	Domain	Interproscan
PF07679	I-set	Immunoglobulin I-set domain	Domain	Interproscan
PF13855	LRR_8	Leucine rich repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000483	Domain	Cysteine-rich flanking region, C-terminal	Interproscan
IPR001611	Repeat	Leucine-rich repeat	Interproscan
IPR003591	Repeat	Leucine-rich repeat, typical subtype	Interproscan
IPR003598	Domain	Immunoglobulin subtype 2	Interproscan
IPR003599	Domain	Immunoglobulin subtype	Interproscan
IPR007110	Domain	Immunoglobulin-like domain	Interproscan
IPR010255	Homologous_superfamily	Haem peroxidase superfamily	Interproscan
IPR013098	Domain	Immunoglobulin I-set	Interproscan
IPR013783	Homologous_superfamily	Immunoglobulin-like fold	Interproscan
IPR019791	Family	Haem peroxidase, animal-type	Interproscan
IPR032675	Homologous_superfamily	Leucine-rich repeat domain superfamily	Interproscan
IPR036179	Homologous_superfamily	Immunoglobulin-like domain superfamily	Interproscan
IPR037120	Homologous_superfamily	Haem peroxidase domain superfamily, animal type	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10075	BASIGIN RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0004601	Molecular Function	peroxidase activity	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0005886	Cellular Component	plasma membrane	Interproscan
GO:0006979	Biological Process	response to oxidative stress	Interproscan
GO:0007156	Biological Process	homophilic cell adhesion via plasma membrane adhesion molecules	Interproscan
GO:0007411	Biological Process	axon guidance	Interproscan
GO:0020037	Molecular Function	heme binding	Interproscan
GO:0030424	Cellular Component	axon	Interproscan
GO:0070593	Biological Process	dendrite self-avoidance	Interproscan
GO:0098632	Molecular Function	cell-cell adhesion mediator activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for OS493_015797-T1 global RNA-seq network