Detailed information of OS493_015055-T1 in Lophelia pertusa Gene info
Gene IDAnnotationScaffoldStartEndStrand
OS493_015055-T1PRE-MRNA-SPLICING FACTOR RBM22scaffold_44108514115865-

Gene Structure
More details in Jbrowse Sequence
CDS
Transcript
Protein

Gene family
Gene familySubfamily
Transcription Factors Familyzf-CCCH

Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00076RRM_1RNA recognition motifDomainInterproscan
PF00642zf-CCCHZinc finger C-x8-C-x5-C-x3-H type (and similar)FamilyInterproscan
PF21369STL11_NSTL11, N-terminalDomainInterproscan

InterPro
InterPro termTypeDescriptionSource
IPR000504DomainRNA recognition motif domainInterproscan
IPR000571DomainZinc finger, CCCH-typeInterproscan
IPR012677Homologous_superfamilyNucleotide-binding alpha-beta plait domain superfamilyInterproscan
IPR035979Homologous_superfamilyRNA-binding domain superfamilyInterproscan
IPR036855Homologous_superfamilyZinc finger, CCCH-type superfamilyInterproscan
IPR039171FamilyPre-mRNA-splicing factor Cwc2/Slt11Interproscan
IPR048995DomainSTL11/RBM22-like, N-terminal domainInterproscan

PANTHER
PANTHER termDescriptionSource
PTHR14089PRE-MRNA-SPLICING FACTOR RBM22Interproscan

Gene Ontology
GO termsCategoryDescriptionSource
GO:0000974Cellular ComponentPrp19 complexInterproscan
GO:0003676Molecular Functionnucleic acid bindingInterproscan
GO:0003723Molecular FunctionRNA bindingInterproscan
GO:0017070Molecular FunctionU6 snRNA bindingInterproscan
GO:0036002Molecular Functionpre-mRNA bindingInterproscan
GO:0046872Molecular Functionmetal ion bindingInterproscan
GO:0071006Cellular ComponentU2-type catalytic step 1 spliceosomeInterproscan
GO:0071007Cellular ComponentU2-type catalytic step 2 spliceosomeInterproscan

KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
------

Expression pattern
 1. Expression trend for OS493_015055-T1 global RNA-seq network
TOP