Detailed information of OS493_014895-T1 in Lophelia pertusa

Genomic Location: scaffold_42:2558462...2568586
NR annotation: KAJ7334571.1, Collagen alpha-6(VI) chain [Desmophyllum pertusum]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
A6NMZ7Collagen alpha-6(VI) chain OS=Homo sapiens OX=9606 GN=COL6A6 PE=1 SV=2
Q6UXI7Vitrin OS=Homo sapiens OX=9606 GN=VIT PE=1 SV=1

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00092VWAvon Willebrand factor type A domainDomainInterproscan
PF00090TSP_1Thrombospondin type 1 domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR036465Homologous_superfamilyvon Willebrand factor A-like domain superfamilyInterproscan
IPR036383Homologous_superfamilyThrombospondin type-1 (TSP1) repeat superfamilyInterproscan
IPR000884RepeatThrombospondin type-1 (TSP1) repeatInterproscan
IPR002035Domainvon Willebrand factor, type AInterproscan
IPR050525FamilyExtracellular Matrix Assembly and OrganizationInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR24020COLLAGEN ALPHAInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0062023Cellular Componentcollagen-containing extracellular matrixInterproscan

Expression pattern
 Expression trend for OS493_014895-T1 global co-expression network
TOP