Detailed information of OS493_014838-T1 in Lophelia pertusa

Genomic Location: scaffold_42:1995515...2004807
NR annotation: KAJ7334515.1, hypothetical protein OS493_014838 [Desmophyllum pertusum]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
P50571Gamma-aminobutyric acid receptor subunit beta-1 OS=Mus musculus OX=10090 GN=Gabrb1 PE=1 SV=1
Q9BLY8Gamma-aminobutyric acid receptor subunit beta OS=Drosophila simulans OX=7240 GN=Rdl PE=2 SV=1
P25123Gamma-aminobutyric acid receptor subunit beta OS=Drosophila melanogaster OX=7227 GN=Rdl PE=1 SV=4

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF02932Neur_chan_membNeurotransmitter-gated ion-channel transmembrane regionFamilyInterproscan
PF02931Neur_chan_LBDNeurotransmitter-gated ion-channel ligand binding domainFamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR036719Homologous_superfamilyNeurotransmitter-gated ion-channel transmembrane domain superfamilyInterproscan
IPR006201FamilyNeurotransmitter-gated ion-channelInterproscan
IPR036734Homologous_superfamilyNeurotransmitter-gated ion-channel ligand-binding domain superfamilyInterproscan
IPR006028FamilyGamma-aminobutyric acid A receptor/Glycine receptor alphaInterproscan
IPR018000Conserved_siteNeurotransmitter-gated ion-channel, conserved siteInterproscan
IPR006029DomainNeurotransmitter-gated ion-channel transmembrane domainInterproscan
IPR038050Homologous_superfamilyNeuronal acetylcholine receptorInterproscan
IPR006202DomainNeurotransmitter-gated ion-channel ligand-binding domainInterproscan
IPR005437FamilyGamma-aminobutyric acid receptor subunit gamma-1/4Interproscan

 PANTHER
PANTHER termDescriptionSource
PTHR18945NEUROTRANSMITTER GATED ION CHANNELInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0006811Biological Processmonoatomic ion transportInterproscan
GO:0016020Cellular ComponentmembraneInterproscan
GO:0004888Molecular Functiontransmembrane signaling receptor activityInterproscan
GO:0005216Molecular Functionmonoatomic ion channel activityInterproscan
GO:0005887Cellular Componentplasma membraneInterproscan
GO:0007165Biological Processsignal transductionInterproscan
GO:0007268Biological Processchemical synaptic transmissionInterproscan
GO:0030594Molecular Functionneurotransmitter receptor activityInterproscan
GO:0034220Biological Processmonoatomic ion transmembrane transportInterproscan
GO:0042391Biological Processregulation of membrane potentialInterproscan
GO:0043005Cellular Componentneuron projectionInterproscan
GO:0045202Cellular ComponentsynapseInterproscan
GO:0050877Biological Processnervous system processInterproscan
GO:0005230Molecular Functionextracellular ligand-gated monoatomic ion channel activityInterproscan
GO:0004890Molecular FunctionGABA-A receptor activityInterproscan
GO:0006821Biological Processchloride transportInterproscan
GO:0007214Biological Processgamma-aminobutyric acid signaling pathwayInterproscan

Expression pattern
 Expression trend for OS493_014838-T1 global co-expression network
TOP