Gene detail

Detailed information of OS493_014789-T1 in Lophelia pertusa Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
OS493_014789-T1	PROTEIN SIDEKICK	scaffold_42	1515348	1531444	-

Gene Structure

More details in Jbrowse Sequence

CDS

OS493_014789-T1

ATGAGACTTTCTCCTTGTCACAGTTTACTTGATAACAACCCAGTGGAATGTGACTGTGGTATAACCCCTTCTGTTTGGAGAGCTAAGGTCACCGGTACATGCGCACAGCCGCCTCATTTGAAAGGAGTTAAAATTGACACAATTCAAGTTGAGGATTTCAAATGCGCCGATAGCTGCACAGAACTCTTCACACGTGGACGACGTTCTGATGGTGTTTACAATCTACGTTTACCTCCAATCAGCCAATATCCCATAAAACAAAGGTATTTTCGAGCGTGGTGCGACATGAGTTGTCCAGAAGGCCCATGGCTGGTCCTTCAACAGCGCAGCAATGCTTCTGTCAACTTTTCAAGAAACTGGATTAAATACGAATTTGGTTTCGGCAAACATGATTTTGAATTTTGGCTTGGAAATTATTTCATGCATGCAATAACATTAGAGAGAGAGCATGTTCTGAGAGTAGAAAAATCGTATATCGACGGTCGCAACCAAACGTATTTTTCTGAATATGACAATTTTCGCGTGTCGAGTCCCTTCAGTAACTACATACTTCATGTAGGAGAGTATCGAGGCAATTTAGGCGACATTCTCCTGGACTCTAATAATTCTGCGTTCTCCACCTGGGATCGCGATAATGACAAGGTAAACGGATCATGCGCACGGATGAATAAAGGAGCGTGGTGGTATGGCGCCACTTGTGATATTCCAGACCTGAACAGCATGCTGAAAAACGTTACCGCACAAGGCCTGATCAAGGTTACTATGAAAACAAAGGAACTCTTGCGAGGCAATTGTAATTCAAGTACAGTTCTTGGTAGAGCTGAATGTGGATGGCCAAACATCACAAAAGAGCAATGTTTGGCACGTGATTGTTGCTATAACAACGATGCAGCTGATAACGTAATAAAGTGCTTTGTCAAGCCTCACTTTGTGTTTCTTGAGCGTATTGGTTGCTTCTCTATTGAAAAAGAACTGGTCAATTCGCTGCAATATCAACGTCCTCCATTAGACAGACGGTTCCATCCTGTACATACCTGCGCCTCTGCAGCCTGGTCACGTGGTCTCAAGATATTTGCCGTGCGAAATGGAAGCGAGTGTCTTGGTGACAAGAACATTTCCGCCATATTACCTCGGCTTAGTGCTTCTGGAGGATGTCTTGGAGGAAGAGGAGGACAAAACGTAGCTGACATTTATCGCTTTACAATTTTCGTTGCAAAGATAAGCGGATTAAAAGCAACTCCGTCTCGAGCTCCTGACTTGGTAACCTCGTACAACACCAGCTCCACAAGTCTGGTAGTACGTTGGAGTCACGTGAAAAAGCAGTATTTTTACGGACAGCCCATTGGATACAAAATTGTTTATTACCCACTTGATTTGGAAAGTGACGTCTTCTCTGTCAGTGTGGACTACACGACAAATATCACAACACTAGCCGACCTGGCTGTCTATACCATGTACGTGATTAATGTGTCAGCAATTAGTTCTGGAGGAGTGGGGCCTGCAAAGACAACAAAGGTTCGAACAGGCGCAATAGCTCCGTCTCGAGCTCCTGACTTGGTAACCTCGTACAACACCAGCTCCACAAGTCTGGTAGTACGTTGGAGTCACGTGAAAAAGCAGTATTTTTACGGACAGCCCATTGGATACAAAATTGTTTATTACCCACTTGATTTGGAAAGTGACGTCTTCTCTGTCAGTGTGGACTACACGACAAATATCACAACACTAGCCGACCTGGCTGTCTATACCATGTACGTGATTAATGTGTCAGCAATTAGTTCTGGAGGAGTGGGGCCTGCAAAGACAACAAAGGCTCGAACAGGCGCAATAGCTCCGTCTCGAGCTCCTGACTTGGTAACCTCGTACAACACCAGCTCCACAAGTCTGGTAGTACGTTGGAGTCACGTGAAAAAGCAGTATTTTTACGGACAGCCCATTGGATACAAAATTGTTTATTACCCACTTGATTTGGAAAGTGACGTCTTCTCTGTCACTGTGAACTACACGACAAATATCACAACACTAGCCGACCTGGCTGTCTATACCATGTACGTGATTAATGTGTCAGCAATTAGTTCTGGAGGAGTGGGGCCTGCAAAGACAACAAAGGCTCGAACAGGCGCAATAGCTCCGTCTCGAGCTCCTGACTTGGTAACCTCGTACAACACCAGCTCCACAAGTCTGGTAGTACGTTGGAGTCACGTGAAAAAGCAGTATTTTTACGGACAGCCCATTGGATACAAAATTGTTTATTACCCACTTGATTTGGAAAGTGACGTCTTCTCTGTCACTGTGAACTACACGACAAATATCACAACACTAGCCGACCTAGCTGTCTATACCATGTACGTGATTAATGTATCAGCAATTAGTTCTGGAGGAGTGGGGCCTGCAAAGACAACAAAGGCTCGAACAGGCGCAATAGCTCCGTCTCGAGCTCCTGACTTGGTAACCTCGTACAACACCAGCTCCACAAGTCTGGTAGTACGTTGGAGTCACGTGAAAAAGCAGTATTTTTACGGACAGCCCATTGGATACAAAATTGTTTATTACCCACTTGATTTGGAAAGTGACGTCTTCTCTGTCACTGTGAACTACACGACAAATATCACAACACTAGCCGACCTGGCTGTCTATACCATGTACGTGATTAATGTATCAGCAATTGGTTCTGGAGGAGTGGGGCCTGCAAAGACAACAAAGGCTCGAACAGGCGCAATAGCTCCGTCTCGAGCTCCTGACTTGGTAACCTCGTACAACACCAGCTCCACAAGTCTGGTAGTACGTTGGAGTCACGTGAAAAAGCAGTATTTTTACGGACAGCCCATTGGATACAAAATTGTTTATTACCCACTTGATTTGGAAAGTGACGTCTTCTCTGTCACTGTGAACTACACGACAAATATCACAACACTAGCCGACCTGGCTGTCTATACCATGTACGTGATTAATGTATCAGCAATTAGTTCTGGAGGAGTGGGGCCTACAAAGACAACAAAGGCTCGAACAGGCGCAATAGCTCCGTCTCGAGCTCCTGACTTGGTAACCTCGTACAACACCAGCTCCACAAGTCTGGTAGTACGTTGGAGTCACGTGAAAAAGCAGTATTTTTACGGACAGCCCATTGGATACAAAATTGTTTATTACCCACTTGATTTGGAAAGTGACGTCTTCTCTGTCACTGTGAACTACACGACAAATATCACAACACTAGCCGACCTGGCTGTCTATAACATGTACTTTATTAATGTGTCAGCAATTAGTTCTGGAGGTGTGGGGCCTGCAAATACAACAAAGGCTCGAACAGGCGCAATAGCTCCGTCTCGAGCTCCTGACTTGGTAACCTCGTGCAACACCAGCTCCACAAGTCTGGTAGTACGTTGGAGTCACGTGAAAAAGCAGTATTTTTACGGACAGCCCATTGGATACAAAATTGTTTATTACCCACTTGATTTGGAAAGTGACGTCTTCTCTGTCAGTGTGGACTACACGACAAATATCACAACACTAGCCGACCTAGCTGTCTATACCATGTACGTGATTAATGTGTCAGCAATTAGTTCTGGAGGAGTGGGGCCTGCAAAGACAACAAAGGCTCGAACAGGCGCAATAGCTCCCACTCGACCACCTAGTCAGATCTTTGTAGACGCAACCAGTTCCACAAGTCTGAATATCACTTGGAGTAGTGTTCCGGAACAACATCGTCACGGAGAGATCCTTATGTATTTGGTTTATATCAGTCGTGCTGATTCTCAGAACGACTACAGAACATTTCGTGCACTTCAGCCAACCCAGTACGTAATTGGTGACCTTGAGGCTAACACGCTTTACGCCATTTGGGTTTCGGCCCGGAACAATATCGGAGAAGGAACCAAAAGTGAGGCTGTTACAGTACGAACTATGGAAGGAGTTCCCAGTGCTGCGCCGATGAATTTACGTTCGGTTCACAGCGACTCGAGTTCCATTATCGTGGAATGGGACCCAATCCCTAAAGGTTCAGAGAATGGTGTACTTCAAGGATACAAGGTGGTATACATGGCGCTGTCACGGTATGCTGATCTCGAGACAAACCATGATGATTATTCGGCTGTTCTACTTGGGCTGGGAGATGACCTGCTATACACCATCAAGGTAGCTGCCTACACAAAAATCGGTACCGGAGATTTTTCACAACCAATCCAAGTCCGAACGAACAAGTGTAAGTAA

Transcript

OS493_014789-T1

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00041	fn3	Fibronectin type III domain	Domain	Interproscan
PF00088	Trefoil	Trefoil (P-type) domain	Domain	Interproscan
PF00147	Fibrinogen_C	Fibrinogen beta and gamma chains, C-terminal globular domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000519	Domain	P-type trefoil domain	Interproscan
IPR002181	Domain	Fibrinogen, alpha/beta/gamma chain, C-terminal globular domain	Interproscan
IPR003961	Domain	Fibronectin type III	Interproscan
IPR013783	Homologous_superfamily	Immunoglobulin-like fold	Interproscan
IPR014716	Homologous_superfamily	Fibrinogen, alpha/beta/gamma chain, C-terminal globular, subdomain 1	Interproscan
IPR036056	Homologous_superfamily	Fibrinogen-like, C-terminal	Interproscan
IPR036116	Homologous_superfamily	Fibronectin type III superfamily	Interproscan
IPR044913	Homologous_superfamily	P-type trefoil domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR44170	PROTEIN SIDEKICK	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0098609	Biological Process	cell-cell adhesion	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for OS493_014789-T1 global RNA-seq network