Detailed information of OS493_014700-T1 in Lophelia pertusa

Genomic Location: scaffold_42:771494...786481
NR annotation: KAJ7334389.1, WD repeat-containing protein 48 [Desmophyllum pertusum]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
Q5F3K4WD repeat-containing protein 48 OS=Gallus gallus OX=9031 GN=WDR48 PE=2 SV=1
Q32PG3WD repeat-containing protein 48 OS=Bos taurus OX=9913 GN=WDR48 PE=2 SV=1
Q8TAF3WD repeat-containing protein 48 OS=Homo sapiens OX=9606 GN=WDR48 PE=1 SV=1
 Gene family
Gene familySubfamily
Ubiquitin FamilyUBD|Other|Beta-prp
Ubiquitin FamilyULD|UFD|RAWUL
Ubiquitin FamilyULD|UBL|SUMO
Ubiquitin FamilyE3|E3 adaptor Cullin RING|DWD

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF11816DUF3337Domain of unknown function (DUF3337)FamilyInterproscan
PF00400WD40WD domain, G-beta repeatRepeatInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR015943Homologous_superfamilyWD40/YVTN repeat-like-containing domain superfamilyInterproscan
IPR036322Homologous_superfamilyWD40-repeat-containing domain superfamilyInterproscan
IPR001680RepeatWD40 repeatInterproscan
IPR021772FamilyWDR48/Bun107Interproscan
IPR051246FamilyWD repeat-containing protein 48Interproscan

 PANTHER
PANTHER termDescriptionSource
PTHR19862WD REPEAT-CONTAINING PROTEIN 48Interproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0005515Molecular Functionprotein bindingInterproscan
GO:0000724Biological Processdouble-strand break repair via homologous recombinationInterproscan
GO:0043130Molecular Functionubiquitin bindingInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K15361WDR48, UAF1; WD repeat-containing protein 48-DNA repair and recombination proteinsko03400deepkoala

Expression pattern
 Expression trend for OS493_014700-T1 global co-expression network
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