Gene detail

Detailed information of OS493_014667-T1 in Lophelia pertusa

Genomic Location: scaffold_42:466758...481646
NR annotation: KAJ7334356.1, hypothetical protein OS493_014667 [Desmophyllum pertusum]

Gene Structure

More details in Jbrowse

Sequence

CDS

OS493_014667-T1

ATGTCCTATAAACTGAGTAGTGTTCTTCGTGGCCATGAGTTAGACGTTAGAGCAGTCTGTCCAGCTGTTTTCCCTGAGGGAGGAATCATAACAGCCTCACGGGATAGAACCGCTCGACTGTGGACTCCAAATGAAGGAAGTGTTGGTTTTGAAGAGGGCCATGTTCTGAGTGGACACAATAACTTCATTTCTGCTGTATGCACAATTCCTTCCACGGACAAATATCAACACGGTCTTGTAGTCACTGGTGGACATGACAATGTTATTCTTGTTTGGACATTGGATTCTCTTGAGCCTGTCCACAGACTGGAGGGTCACACTGGAGCAGTTTGTTCTTTAATAGCTGGGAAATTTGGAACACTTCTTTCTGGCTCATGGGACAACACAGCACGTGTATGGATTGGAAGCAAATGTATGATGACATTACAAGGTCATGACGCAGCTGTGTGGGCTGTTCAACTAATGCCAGACCATGGCCTTATGCTTACAGGTTCAGCTGACAAGACAATCAAGATGTGGAAAGCAGGGACATGTCAGATGACCTTTGCAGGGCACAGTGACTGCGTCAGAGGCCTAGCTGTTCTCTCAGCTCTGGAGTTTTTGTCCTGTTCTAATGATAGCACCATCAGAAGATGGATGAGTACAGGTGAATGTCTTCAGGTGTATACAGGACATACAAGCTTCATCTACAGTATTGCAGCTCTGGCTGATGAGTGTGGTAGTTTTGTTTCTGTTGGAGAAGACAGAACTCTGCGAATATGGAAAGGTGTGGGAGAATGCTCTCAAACGATCACCCTGCCTGCTCAGTCAGTCTGGAGTGTCACTTGTTTAAGTAATGGAGACATTGTCACTGGATCAAGTGATGGTATTGCGCGTGTTTTCACTGCTTCAGAGGAGAGAGTGGCGTCAGAGGAAGAGCTGAAGCTATTTGATGCTGAAGTTGCAAGTCATGCTATTCCAGCCGAGGCTGCTAGTGGTCAGTTGGGTGATGTCAAACTAGAAGATCTTCCTGGACCAGAGGCTCTTCTAAGACCAGGAGATAGAAGTGCTCAAACAAAGCTCATAAGGAGAGGAAATCTTATTGAATGTCACCAGTGGAATACCATGGAAACAAGGTGGGATAAGGTTGGTGAAGTAGTGGGATCAGCAGGAACAGAAGGTGCTGCCAGACAAACTAACAAAACAATGTTCAATGGAAAGGAGTATGATTTTGTGTTTGATGTTGAAATTCAAGAAGGAAGTCCTCGGATGAAGCTCCCTTACAATCTGAATGATGATCCCTGGATGGCTGCACATGAGTTTCTAGAGCGGAATGATCTCAGCCAGATGTTCTTGGATCAAGTGGTTGACTTTATCCTTAAGAACACCAAAGGAGTTACAATAGGACAACAGGCATCGTCAGCTGCTGATCCGTTTACAGGAGCGGGTCGTTATATTCCACCTACTGCGCCGTCACATCCAGCGTCTGATGTCACTATGGGAGGAGGAAGTGTGGATCCTTTCACAGGTGGTGGTAGCTACAGGCCATCATATACCGGTACATCTCAACAGACTAATGTTGGAGGCGGGGTGGACCCGTTTACAGGTTCCAGTAGTTACAGATCTGAACAGACAGGCAGTCAAGCCAGTCCTCCAAATGAAAGCTCCACAGTTGCTCATAATCCTTACTTTCCTAAGACATCTTGTGTATCGTTTGATAGCGCTAACATCAATGCAATCGCTGGAAAATTAAAAGAATTCAACGGCAGTTTAGAAGAGGAACAACGATTAGCAGAGGACGAACTTCAAAACTTATTGGAATTTCTGAACGACGTGGCGAGTGCGGATAAGTCCAGTTCACCAAAGGTTGAACAGATGTCTTCGCTTGTAAAAGCGTTGAAATGGCCTCCGAATCAGCTATTTCCAGCTCTAGATATTTTGCGTCTGGCTGTACGTTTTCCGTCCGTCGCCAACATCTGTTGCAGTGGTTCTGAGGGCGACAACCTGACGGCTCACTTACTCGCCTGTACAAGGGACGATAATCCTCAATCCAATGTACTGCTGTCGTTTAGAATATTTTCTAATCTGTTTATGTCTTATGACGGCTCAGCTTTAGTACTCAGACACAGAGAGAAGATAGTAGAACACTCATTATCTTGGCGTAAATGCTCGAACAAGAACATCAGGATATCGCTATGTACCGTTCTACTCAATTTTTCTGTCCTTCTACGAAAGCATCACGATTTTGAAGCAAAGACGCAGTGTTTATCAGCTCTAGCTGGCATTTTAGAAAATGAAACAGATAGTGAAGCCAGATTCAGGTCTGTAGTGGCCGTTGGAACTTTGATTTGGGGTGACTCAGACGCCCAGGCGTTAGCTCAATCATTAGGAATTGAAAGTTCATTGGAGTCGTTATCCTCTGTTACAGATCCGCCCAAGGTTGGTGACTGTGCATCCAAAGTTTTATCAGCATTAGCGATGGACTAA

Transcript

OS493_014667-T1

Protein

Uniprot

Uniprot term	Description
P54319	Phospholipase A-2-activating protein OS=Rattus norvegicus OX=10116 GN=Plaa PE=1 SV=3
P27612	Phospholipase A-2-activating protein OS=Mus musculus OX=10090 GN=Plaa PE=1 SV=4
Q9Y263	Phospholipase A-2-activating protein OS=Homo sapiens OX=9606 GN=PLAA PE=1 SV=2

Gene family

Gene family	Subfamily
Ubiquitin Family	UBD\|Other\|Beta-prp
Ubiquitin Family	E3\|E3 adaptor Cullin RING\|CDC20
Ubiquitin Family	UBD\|Other\|PFU
Ubiquitin Family	E3\|E3 adaptor Cullin RING\|DWD

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF08324	PUL	PUL domain	Repeat	Interproscan
PF00400	WD40	WD domain, G-beta repeat	Repeat	Interproscan
PF09070	PFU	PFU (PLAA family ubiquitin binding)	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001680	Repeat	WD40 repeat	Interproscan
IPR015943	Homologous_superfamily	WD40/YVTN repeat-like-containing domain superfamily	Interproscan
IPR036322	Homologous_superfamily	WD40-repeat-containing domain superfamily	Interproscan
IPR013535	Domain	PUL domain	Interproscan
IPR038122	Homologous_superfamily	PFU domain superfamily	Interproscan
IPR015155	Domain	PLAA family ubiquitin binding domain	Interproscan
IPR016024	Homologous_superfamily	Armadillo-type fold	Interproscan
IPR011989	Homologous_superfamily	Armadillo-like helical	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR19849	PHOSPHOLIPASE A-2-ACTIVATING PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0005737	Cellular Component	cytoplasm	Interproscan
GO:0010992	Biological Process	ubiquitin recycling	Interproscan
GO:0043130	Molecular Function	ubiquitin binding	Interproscan
GO:0043161	Biological Process	proteasome-mediated ubiquitin-dependent protein catabolic process	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K14018	PLAA, DOA1, UFD3; phospholipase A-2-activating protein	-	Protein processing in endoplasmic reticulum	ko04141	deepkoala

Expression pattern

Expression trend for OS493_014667-T1 global co-expression network