Detailed information of OS493_014653-T1 in Lophelia pertusa

Genomic Location: scaffold_42:290077...293795
NR annotation: KAJ7334343.1, Spectrin alpha chain, non-erythrocytic 1 [Desmophyllum pertusum]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
Q13813Spectrin alpha chain, non-erythrocytic 1 OS=Homo sapiens OX=9606 GN=SPTAN1 PE=1 SV=3
P16546Spectrin alpha chain, non-erythrocytic 1 OS=Mus musculus OX=10090 GN=Sptan1 PE=1 SV=4
P16086Spectrin alpha chain, non-erythrocytic 1 OS=Rattus norvegicus OX=10116 GN=Sptan1 PE=1 SV=2

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF08726EFhand_Ca_insenCa2+ insensitive EF handDomainInterproscan
PF13499EF-hand_7EF-hand domain pairDomainInterproscan
PF00435SpectrinSpectrin repeatDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR002048DomainEF-hand domainInterproscan
IPR014837DomainEF-hand, Ca insensitiveInterproscan
IPR018247Binding_siteEF-Hand 1, calcium-binding siteInterproscan
IPR002017RepeatSpectrin repeatInterproscan
IPR011992Homologous_superfamilyEF-hand domain pairInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR11915SPECTRIN/FILAMIN RELATED CYTOSKELETAL PROTEINInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0005509Molecular Functioncalcium ion bindingInterproscan
GO:0005886Cellular Componentplasma membraneInterproscan
GO:0030036Biological Processactin cytoskeleton organizationInterproscan
GO:0030054Cellular Componentcell junctionInterproscan
GO:0030864Cellular Componentcortical actin cytoskeletonInterproscan
GO:0042995Cellular Componentcell projectionInterproscan
GO:0051015Molecular Functionactin filament bindingInterproscan
GO:0005515Molecular Functionprotein bindingInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K02183CALM; calmodulin-Exosomeko04147deepkoala

Expression pattern
 Expression trend for OS493_014653-T1 global co-expression network
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