Gene detail

Detailed information of OS493_014652-T1 in Lophelia pertusa Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
OS493_014652-T1	SPECTRIN/FILAMIN RELATED CYTOSKELETAL PROTEIN	scaffold_42	262113	288822	+

Gene Structure

More details in Jbrowse Sequence

CDS

OS493_014652-T1

ATGGCAGAGGTTGAGGCTCGTCAAATAGCCATTCTAGAAACTGTTGAAGACATCCAAAGTCGGCGTGAACAAGTTTTACGGCGCTATGCGGAGTTCAAAGAAGCGACTCGAGTACGGCGCCAGCGTTTAGAAGATGCGAAACGCTACCATCAATTCAAGCGTGATGCCGATGAAGTCGAAGCTTGGATCAACGAGAAACTTCAGATCGCCTGCGATGAATGCTATAAGGATCCAACCAACCTTCAGGGAAAACTTCAGAAACATCAGGCTTTTGAAGCAGAGATCTCAGCTCACAGCAACGCAATTGTTGAACTTCAAGACAATGGCGAAGGGATGATCAGCGAGTCGCATTATGCCTCTGATCTTATCAGGGAGCGCCTTGATTCCCTCATCAGGCTGTGGGAGCTGCTGCTTTCCAAGTCAGCGGAGAAAGGCCGCATGCTTCTTTTCACCCAGAAGAGAGTTCACTTCCTTCATGAAACAGAAGAAGTCATGTCCTGGATTTTGGAGAAGGAAGCAATTGCCACTTCAGAAGAGGTCGGAAGAGACCTGGAACATGTTGAAGTTCTGCAGAAGAAATTTGAGGACTTCTTGAAGGATATCCAGGCAAACGAGTCAAGGGTGACATACATCAACGATCTCGCTCATCAACTTGGTGATGAAGGTCATCCTGACATTGAACTGATTAGTGCAAAGCAAACGGAAGTTAACGAGGCATGGGAGAGACTGAAAATGCTGGCATTTAAACGTCAGAAAAGACTTGCAGGGGCTCAGGAGATTCACAGTTTCTATCGCAATGCTGATGAAACCAAGAACTGGATCAATGAGAAGGACAAAGTACTGTCATCTGATGACTATGGAAAGGATCTTGCCAGTGTCAATGCCTTGCTACGAAAGCATGAAGCTTTAGAAAGAGATTTGGCCGCTGTGGAAGATAAGGTCACAGCACTTGCTCAGGAGTCAGATCAGCTGCAAGAAGCCCATCCAGACAGTGCTGATGAAATTGCTGCTAAGCAAGATGAGATTGTCACTGCATGGGGAAACCTCAAGGACAAGTCTGGAGTACGAAAGACAAGGCTAGAGGACTCTTACCGGCTTCAAAGATTTATCTGTGACTACAGGGACCACATCTCATTTATAAATGAAATGAAAGTCTTGATCCAAAGTGATGAACTGGCAAAAGATGTTGCTAGCGCAGAAAGTCTTCTGGAGCGACATCAAGAACACAAGGGTTATATTGATGCTTCAGAGGATGGATTCAGGAAGTTTGCTAACGATGGAGAAGAACTTGTCAATTCCAACCATTATGCTAGTGATGAGATCAAAGAAAAGCTGACAAGCCTGGAAACAGAGAAGATGGAACTGCTGGAGCTGTGGGAGAAGAGACGTGTCCAGTTTGAGCAGTGCATGGAGCTGCAGCTGTTTAATCGGGATTGTGAGCATGCTGATGCTACCATGACTAAACAGGAGGCATTCCTTGCTGATGATAACCTTGGGGATTCCCTTGATGGAGTGGACGCGTTAATCAGGAAGCATGAAGACTTTGACAAGTCTTTTGCTGCCCAAGCAGAGAAGATCAATAGCATTGACGAGTATGCAAACCGCCTCATTGACAGCAATCACTATGCATCAGACGAGGTTCGTCAGAGGAGAGATGGAATAGTGGAAAGACGTCAGAACATCGAGGAGTTGTCTAAGGCTCGCAGGTCAAAGCTTGAGGAATCTCGTAAACTGCAGCAGTTCGAGAGAGATGCTGATGAAGTCAAAAGCTGGATTACTGAAAAGCTGAAGATTGCTTGTGATGAATCTTACAAGGATCCTACCAACCTGCAAGGAAAACTCCAGAAGCACCAAGCCTTTGAAGCTGAGCTGAATGCCAATCAAAGTCGACTTGACGCAGTGGATAACACTGGAGAACAGCTGATTGGAGATGAACATTATGCGTCAGAACAAATTAGAGAAAGGCTTGATGAGCTGCACAAGTTGTGGTCCTATCTTTTTGAGAGATCAAATGATAAAGGGCAGAAATTAAAGGAAGCAGCACAGCAACAGCAGTTCAACCGAGGTGCCGAGGATGTTGAATTGTGGTTCAGTGAAGTTGAAAACCTACTTGCCCTTGAGGATGTTGGGAAGGATCTGACAAGTGTACAGAACCTTCAAAAGAAGCATGCTATGATTGAAGCTGATGTTATCGCCCGTGCTGAGAAGATTGAAGTTGTGAATGCACAAGCTGATTTGTTTGCTGAGGCCGACCACTTTGATGCTCCTACTATCAACACAAAGAAGGAAGCTCTTAATGCCAGATACCAGCTGATTCAGGCTCCTCTTCTTGCTCGTAAAGCTAAGCTTGCAGATGCAGAGAGGCTAAAGCGATTCCTTCATAATGTTGAAGATGAAGAGGCTTGGATCAGGGAGAAGGAACCTATTGCCTCATCTAAAAACACTGGCCGAGATTTGACTGGAGCCCAGAATCTGTCAAAGAAACACCAGGCATTAATGACTGAAACTGGTAGTCATGAACCACGCATCAGAGCTGTGTGTGACAATGGTGTGCAGATGATAGATAATGGGCATTTTGCTGCTGATGAGATCAAAGAGAAGATTGACGACCTTGACCAGAAATGGCTTGATTTCAAGGACAAGGCAGCTGTACGAAAAGGTCATCTGGATGACTCACTTCAAGCTCATCAGTATCTGGCTGATGTAGCTGAAGCGGAATCCTGGTTGAAGGAGAAAGAACCCATTGTCACCAGCGATGACTATGGCAAAGACGAGGATAGTGCACAGGCGTTGTTGACCAAACATGATGCTATCATGTCGGACTTGAGAGCCTATGGAACTGTTGTCGATGGGTTGAGAGAACAGAGTCAACACTGTAAGCCTTCAGCTCATGTCACAGACATCTCCGACAAGGAATGTGTGGTTGCACTTTATGATTACCAAGAAAAGACAGCTAGGGAGGTCTCCATGGAGAAGGGAGACATTCTTACCCTCCTGAATTCTAGCAACAAGGACTGGTGGAAAGTGGAAACGAATGACAGGCAAGGTTTTGTTCCTGCGGCATATGTCAAAACGATTGACTCGCACAAAGCCTCACAGGAGCTTCTCCAACAGGCTCCTGAAGTGGACTCTGTTGGTCAAAGACAGCAGGCTTTGGATGACAAATATAATGATCTGATGGACAAAGGTGAAGAGCGCAAGAGGAAGCTGGAAGACTCCATTCAGCGATACAGTCTGTTACGAGATGCTCATGAGTTGGAGTCATGGATCAATGACAAGGAAGCCATTGTCACTTCTGAGGAGGTTGGAAAGGATTATGAACATGTGGAAGCACAACAGAAAAAGTTTGATGACTTTGAGAAGGATATGATAACCAAAGAGGTGCGCATCAGGGAGCTTACCTTGCTGGCTGAGAAACTAAAAGTTGAACACTATCAAGAATATGAGATGATCCGTGAGATGATCGAGCGGTTGAAGCAAAAATGGACAAATCTTGTCACCATGTCTGAGCAGAGGAAAGAGAACCTTGACAATGCTCAGGAGATTCAGAAATTCCACAGGGATGCTGATGACACCAAGCAATGGATCTCGGAGAAGGACACTGCTCTGTCTACTTCAGATTACGGCCGAGATCTGGCTAGTGTCCAGGCCCTACAGAGAAAGCATGAGGTGTTGGAGAGAGACTTGGCTGCATTGGAAGAGAAGGTCCGTGAACTGAATGTTGAAGCTGCCAAGTTGACGTCTAGTCATCCGAATGCAGCGCAAGACATTGAATGGAAGAGACACGAGTTGGAGGAGGCGTGGGCAAATCTCAGGGAACAGGCTGCTGCAAGAAAGGGCAAATTGAGAGACTCGTATGACTACTTCCACTTCCTCAATGAATTCAGAGATCTTACTTCCTGGATCAATGGTATCATGGCACTTGTAACATCAGATGAGCTTGCAAAGGATGTGGCTAGTGCCGAGGCTCTTTTGGACAGGCACCAGGAACACCGTGCAGAAATCGATGCACGTGATAGCACCTTCCAATCTCTTGAAGATTTTGGCAAGGATTTGTTGGACAAAGAACATTACGCCAGTCCTGACATCCGTGAAAAGTTGGATACCATCGCCACAGAGCGAGAAGAACTGGAAAAGGCTTGGGCTGCTCGCAAACAGAGACTGGATGAGTGTCTGGAATTGCAGTTATTCAACCGAGATGCTGAACAGCTAGAGCAGTGGATGGCAACCCGCGAGGCCATCATTCAGAGTGAGGATGTCGGAGAAGCAGCCGAGGGTGCTGAGGCTCTGATCAAGAAACACGAAGACTTCACCAAGACGCTGGCTGTGCAGGACAAGAAGATCAATGCTCTGAAGGATAACGCTGACAGGCTGATTGACAACGATCACTATGATTCTCCTGCTATTGCCGAAAGGATTGCTGCTGTGTTGGCCAGGTGGGCTACACTTAAGGCAGCCCTTGTGGAACGCCGCTCTAAGCTGGGTGAATCTAAAACCATTCAACAGTTCAGTCGTGATGCCGAGGACATTGAGGCATGGGTCAGTGAGAAGCTTCAGACTGTTCTGGATGAATCTTACAAGGATCCAACCAACCTGCAGTCCAAGTTCCAGAAGCATCAGGCATTTGAAGCTGAAGTATCAGCCAATCAGGAAAGGGTTCTGGAGACAATTAACTTAGCGGAAGGCCTGATTGAACAGCGCAAGTGTGCAGGAAGCGAGGAGATTGTGAAGGAGAGAATCACCAAACTTCAGCAGCAATGGACGTACCTGGTAACAAAGTCAAGTGAGAAAAGTCAGCATCTGAAGGAGTCTAATCAGCAACAACAGTTTAACACCAACGTCAAGGAATTGGATTTCTGGCTCGGCGAGGTTGAATCTACCCTATCTCATGATGATTATGGTCGTGACTTGGCCAGTGTTCAGAATCTCACCAAGAAACACCAGCTTGTGGAAGCAGACATTACTGCTCATGAGGATCGCATTACAGATCTGCAAGCTCAGACCCAGAACTTTGCTGAAGTTGGTCATTTCGATGCGGACTCTTTGCAGGATAAATCCCGCATTATTGCTGATCGCTATGACACGGTAAAGGACATGGCTTCAGATCGCCACAAGAAATTGGATGAGTCCAATGCTTTGCACCAGTTCTACCGGGATGTGGATGACGAGGAGTCCTGGATCAAAGAGAAAAAGCTGTTGACAAGTTCTGAGGATTATGGTAAGGACTTGACTGGGGTGCAGAACTTGCGTAAGAAGCATCAACGATTGGAAGCTGAACTGAACACTCATGAGGCAAGAATTCAGGCTGTGCTGTTGTGTGGTCGTACATTTATTGATGAGGGACATAGCAGCTCAGATGACATCAAGGCTCGCTGTGACCAGCTGCAGGAAAACTGGGATGAGCTCAAGAATCTGGCAGAACAGAGGCAGCACAAACTGGACGAGTCTCTTGCTTACCAGCAGTTCAGTGCTAATGTCGGTGAAGAGGAATCTTGGATCAATGAAAAGAACACTCTTGTTGGAAGTGATGACTATGGTGATACACTGGCTGCTGTTCAGGGTCTCTTGAAGAAGCATGAAGCATTTGAGACAGATCTTGAGGTGCACAGGGAGAGAGTGCAGGATATTGAAGATGCTGGCAACAAGCTCGTTGAAAAGGGTAACCACCAATCTGAGTTGATTGAACACAGGATTTCATCCATCAAAAGCAAACTGCAAGAGATGGAGAGGATGGCATCGTATCGCAAGTCCAAGCTGAATGACAACTCAGCTTTCTTGCAGTTCAACTGGAAGGCTGATGTGGTAGAATCGTGGATTGGTGACAAAGAAGGAATAGCTCGGTCAGATGACCTGGGACGTGATTTGTCTTCAGTGCAGACTCTTTTCACTAAACAGGAAACCTTCGACTCGGGTCTTCAAGCGTTTGAAAATGAGGGAATCGCTCGCGTCACAGTGCTGAAGGATGAGCTAGTCCACTCTCAACACGAGCAGTCACCTGCCATCATCAAACGTCATGATGACCTTATTAGGAGGTGGGAGCAGCTGTTGGAAGATTCCAGGACTCGTAAAGAACGACTCCAACACGCACAAGATCAGTACAAGAAGGTGGAGGACTTGTTCTTGTTGTTTGCCAAGAAAGCTTCAGCTTTCAACAGTTGGTTTGAGAATGCAGAGGAAGATCTTACTGATCCAGTGCGCTGTAACTCTGTTGAGGAGATACGTGTAAGTTGA

Transcript

OS493_014652-T1

Protein

OS493_014652-T1

MAEVEARQIAILETVEDIQSRREQVLRRYAEFKEATRVRRQRLEDAKRYHQFKRDADEVEAWINEKLQIACDECYKDPTNLQGKLQKHQAFEAEISAHSNAIVELQDNGEGMISESHYASDLIRERLDSLIRLWELLLSKSAEKGRMLLFTQKRVHFLHETEEVMSWILEKEAIATSEEVGRDLEHVEVLQKKFEDFLKDIQANESRVTYINDLAHQLGDEGHPDIELISAKQTEVNEAWERLKMLAFKRQKRLAGAQEIHSFYRNADETKNWINEKDKVLSSDDYGKDLASVNALLRKHEALERDLAAVEDKVTALAQESDQLQEAHPDSADEIAAKQDEIVTAWGNLKDKSGVRKTRLEDSYRLQRFICDYRDHISFINEMKVLIQSDELAKDVASAESLLERHQEHKGYIDASEDGFRKFANDGEELVNSNHYASDEIKEKLTSLETEKMELLELWEKRRVQFEQCMELQLFNRDCEHADATMTKQEAFLADDNLGDSLDGVDALIRKHEDFDKSFAAQAEKINSIDEYANRLIDSNHYASDEVRQRRDGIVERRQNIEELSKARRSKLEESRKLQQFERDADEVKSWITEKLKIACDESYKDPTNLQGKLQKHQAFEAELNANQSRLDAVDNTGEQLIGDEHYASEQIRERLDELHKLWSYLFERSNDKGQKLKEAAQQQQFNRGAEDVELWFSEVENLLALEDVGKDLTSVQNLQKKHAMIEADVIARAEKIEVVNAQADLFAEADHFDAPTINTKKEALNARYQLIQAPLLARKAKLADAERLKRFLHNVEDEEAWIREKEPIASSKNTGRDLTGAQNLSKKHQALMTETGSHEPRIRAVCDNGVQMIDNGHFAADEIKEKIDDLDQKWLDFKDKAAVRKGHLDDSLQAHQYLADVAEAESWLKEKEPIVTSDDYGKDEDSAQALLTKHDAIMSDLRAYGTVVDGLREQSQHCKPSAHVTDISDKECVVALYDYQEKTAREVSMEKGDILTLLNSSNKDWWKVETNDRQGFVPAAYVKTIDSHKASQELLQQAPEVDSVGQRQQALDDKYNDLMDKGEERKRKLEDSIQRYSLLRDAHELESWINDKEAIVTSEEVGKDYEHVEAQQKKFDDFEKDMITKEVRIRELTLLAEKLKVEHYQEYEMIREMIERLKQKWTNLVTMSEQRKENLDNAQEIQKFHRDADDTKQWISEKDTALSTSDYGRDLASVQALQRKHEVLERDLAALEEKVRELNVEAAKLTSSHPNAAQDIEWKRHELEEAWANLREQAAARKGKLRDSYDYFHFLNEFRDLTSWINGIMALVTSDELAKDVASAEALLDRHQEHRAEIDARDSTFQSLEDFGKDLLDKEHYASPDIREKLDTIATEREELEKAWAARKQRLDECLELQLFNRDAEQLEQWMATREAIIQSEDVGEAAEGAEALIKKHEDFTKTLAVQDKKINALKDNADRLIDNDHYDSPAIAERIAAVLARWATLKAALVERRSKLGESKTIQQFSRDAEDIEAWVSEKLQTVLDESYKDPTNLQSKFQKHQAFEAEVSANQERVLETINLAEGLIEQRKCAGSEEIVKERITKLQQQWTYLVTKSSEKSQHLKESNQQQQFNTNVKELDFWLGEVESTLSHDDYGRDLASVQNLTKKHQLVEADITAHEDRITDLQAQTQNFAEVGHFDADSLQDKSRIIADRYDTVKDMASDRHKKLDESNALHQFYRDVDDEESWIKEKKLLTSSEDYGKDLTGVQNLRKKHQRLEAELNTHEARIQAVLLCGRTFIDEGHSSSDDIKARCDQLQENWDELKNLAEQRQHKLDESLAYQQFSANVGEEESWINEKNTLVGSDDYGDTLAAVQGLLKKHEAFETDLEVHRERVQDIEDAGNKLVEKGNHQSELIEHRISSIKSKLQEMERMASYRKSKLNDNSAFLQFNWKADVVESWIGDKEGIARSDDLGRDLSSVQTLFTKQETFDSGLQAFENEGIARVTVLKDELVHSQHEQSPAIIKRHDDLIRRWEQLLEDSRTRKERLQHAQDQYKKVEDLFLLFAKKASAFNSWFENAEEDLTDPVRCNSVEEIRVS

Gene family

Gene family	Subfamily
Ubiquitin Family	UBD\|Other\|SH3

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00018	SH3_1	SH3 domain	Domain	Interproscan
PF00435	Spectrin	Spectrin repeat	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001452	Domain	SH3 domain	Interproscan
IPR002017	Repeat	Spectrin repeat	Interproscan
IPR018159	Repeat	Spectrin/alpha-actinin	Interproscan
IPR035825	Domain	Alpha Spectrin, SH3 domain	Interproscan
IPR036028	Homologous_superfamily	SH3-like domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11915	SPECTRIN/FILAMIN RELATED CYTOSKELETAL PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0005886	Cellular Component	plasma membrane	Interproscan
GO:0030036	Biological Process	actin cytoskeleton organization	Interproscan
GO:0030054	Cellular Component	cell junction	Interproscan
GO:0030864	Cellular Component	cortical actin cytoskeleton	Interproscan
GO:0042995	Cellular Component	cell projection	Interproscan
GO:0051015	Molecular Function	actin filament binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for OS493_014652-T1 global RNA-seq network