Detailed information of OS493_014450-T1 in Lophelia pertusa

Genomic Location: scaffold_41:847426...852631
NR annotation: KAJ7361809.1, mRNA turnover 4 [Desmophyllum pertusum]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
A4FV84mRNA turnover protein 4 homolog OS=Bos taurus OX=9913 GN=MRTO4 PE=2 SV=1
Q9D0I8mRNA turnover protein 4 homolog OS=Mus musculus OX=10090 GN=Mrto4 PE=1 SV=1
Q9UKD2mRNA turnover protein 4 homolog OS=Homo sapiens OX=9606 GN=MRTO4 PE=1 SV=2

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF17777RL10P_insertInsertion domain in 60S ribosomal protein L10PDomainInterproscan
PF00466Ribosomal_L10Ribosomal protein L10FamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR043141Homologous_superfamilyLarge ribosomal subunit protein uL10-like domain superfamilyInterproscan
IPR033867FamilyRibosome assembly factor Mrt4Interproscan
IPR051742FamilyRibosomal Assembly Factor uL10Interproscan
IPR040637DomainLarge ribosomal subunit protein uL10-like, insertion domainInterproscan
IPR043164Homologous_superfamilyLarge ribosomal subunit protein uL10-like, insertion domain superfamilyInterproscan
IPR001790FamilyLarge ribosomal subunit protein uL10Interproscan

 PANTHER
PANTHER termDescriptionSource
PTHR45841MRNA TURNOVER PROTEIN 4 MRTO4Interproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0000027Biological Processribosomal large subunit assemblyInterproscan
GO:0000956Biological Processnuclear-transcribed mRNA catabolic processInterproscan
GO:0003723Molecular FunctionRNA bindingInterproscan
GO:0005730Cellular ComponentnucleolusInterproscan
GO:0006364Biological ProcessrRNA processingInterproscan
GO:0030687Cellular Componentpreribosome, large subunit precursorInterproscan
GO:0042273Biological Processribosomal large subunit biogenesisInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K14815MRT4; mRNA turnover protein 4-Ribosome biogenesisko03009deepkoala

Expression pattern
 Expression trend for OS493_014450-T1 global co-expression network
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