Gene detail

Detailed information of OS493_014343-T1 in Lophelia pertusa

Genomic Location: scaffold_40:2349908...2365165
NR annotation: KAJ7373195.1, WD repeat-containing protein 43 [Desmophyllum pertusum]

Gene Structure

Sequence

Uniprot

Uniprot term	Description
Q15061	WD repeat-containing protein 43 OS=Homo sapiens OX=9606 GN=WDR43 PE=1 SV=3
Q6ZQL4	WD repeat-containing protein 43 OS=Mus musculus OX=10090 GN=Wdr43 PE=1 SV=2
Q04177	U3 small nucleolar RNA-associated protein 5 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=UTP5 PE=1 SV=1

Gene family

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF04003	Utp12	Dip2/Utp12 Family	Family	Interproscan
PF12894	ANAPC4_WD40	Anaphase-promoting complex subunit 4 WD40 domain	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR007148	Domain	Small-subunit processome, Utp12	Interproscan
IPR001680	Repeat	WD40 repeat	Interproscan
IPR052414	Family	U3 small nucleolar RNA-associated WD repeat-containing protein	Interproscan
IPR036322	Homologous_superfamily	WD40-repeat-containing domain superfamily	Interproscan
IPR015943	Homologous_superfamily	WD40/YVTN repeat-like-containing domain superfamily	Interproscan
IPR024977	Domain	Anaphase-promoting complex subunit 4-like, WD40 domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR44267	WD REPEAT-CONTAINING PROTEIN 43	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0000462	Biological Process	maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	Interproscan
GO:0005730	Cellular Component	nucleolus	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K14546	UTP5, WDR43; U3 small nucleolar RNA-associated protein 5	-	Ribosome biogenesis	ko03009	deepkoala

Expression pattern