Detailed information of OS493_014307-T1 in Lophelia pertusa

Genomic Location: scaffold_40:1952824...1974301
NR annotation: KAJ7373159.1, 5'-3' exoribonuclease 2 [Desmophyllum pertusum]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
Q9DBR15'-3' exoribonuclease 2 OS=Mus musculus OX=10090 GN=Xrn2 PE=1 SV=1
Q9H0D65'-3' exoribonuclease 2 OS=Homo sapiens OX=9606 GN=XRN2 PE=1 SV=1
Q5ZIP45'-3' exoribonuclease 2 OS=Gallus gallus OX=9031 GN=XRN2 PE=2 SV=1

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF17846XRN_MXrn1 helical domainDomainInterproscan
PF03159XRN_NXRN 5'-3' exonuclease N-terminusFamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR027073Family5'-3' exoribonucleaseInterproscan
IPR041412DomainXrn1, helical domainInterproscan
IPR004859DomainXrn1, N-terminalInterproscan
IPR017151Family5'-3' exoribonuclease type 2Interproscan

 PANTHER
PANTHER termDescriptionSource
PTHR123415'->3' EXORIBONUCLEASEInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0003676Molecular Functionnucleic acid bindingInterproscan
GO:0004527Molecular Functionexonuclease activityInterproscan
GO:0004534Molecular Function5'-3' RNA exonuclease activityInterproscan
GO:0005634Cellular ComponentnucleusInterproscan
GO:0006139Biological Processnucleobase-containing compound metabolic processInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K12619XRN2, RAT1; 5'-3' exoribonuclease 2EC:3.1.13.-
Transfer RNA biogenesisko03016deepkoala

Expression pattern
 Expression trend for OS493_014307-T1 global co-expression network
TOP