Maintained by Dr. Jiajie She in Longjun Wu's Lab & Pei-Yuan Qian's Lab and supported by Southern Marine Science and Engineering Guangdong Laboratory (Guangzhou) & The Hong Kong University of Science and Technology
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Genomic Location: scaffold_40:961335...964679
NR annotation: KAJ7373083.1, hypothetical protein OS493_014230 [Desmophyllum pertusum]
| CDS | |
| OS493_014230-T1 | |
| Transcript |
| OS493_014230-T1 |
| Protein |
| OS493_014230-T1 |
| Uniprot term | Description |
|---|---|
| F4KGU4 | ATP-dependent RNA helicase DEAH12, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At5g10370 PE=3 SV=1 |
| P0CE10 | ATP-dependent RNA helicase DEAH11, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At4g01020 PE=3 SV=1 |
| Q54F05 | ATP-dependent RNA helicase dhx8 OS=Dictyostelium discoideum OX=44689 GN=dhx8 PE=3 SV=1 |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF21010 | HA2_C | Helicase associated domain (HA2), ratchet-like | Domain | Interproscan |
| PF04408 | HA2_N | Helicase associated domain (HA2), winged-helix | Domain | Interproscan |
| PF07717 | OB_NTP_bind | Oligonucleotide/oligosaccharide-binding (OB)-fold | Domain | Interproscan |
| PF01485 | IBR | IBR domain, a half RING-finger domain | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR007502 | Domain | Helicase-associated domain | Interproscan |
| IPR048333 | Domain | Helicase associated domain (HA2), winged-helix domain | Interproscan |
| IPR027417 | Homologous_superfamily | P-loop containing nucleoside triphosphate hydrolase | Interproscan |
| IPR012677 | Homologous_superfamily | Nucleotide-binding alpha-beta plait domain superfamily | Interproscan |
| IPR011709 | Domain | DEAD-box helicase, OB fold | Interproscan |
| IPR002867 | Domain | IBR domain | Interproscan |
| IPR036612 | Homologous_superfamily | K Homology domain, type 1 superfamily | Interproscan |
| IPR044066 | Domain | TRIAD supradomain | Interproscan |
| IPR035979 | Homologous_superfamily | RNA-binding domain superfamily | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR18934 | ATP-DEPENDENT RNA HELICASE | Interproscan |
| GO terms | Category | Description | Source |
|---|---|---|---|
| GO:0008270 | Molecular Function | zinc ion binding | Interproscan |
| GO:0003723 | Molecular Function | RNA binding | Interproscan |
| GO:0003676 | Molecular Function | nucleic acid binding | Interproscan |
| GO:0004386 | Molecular Function | helicase activity | Interproscan |
| GO:0005622 | Cellular Component | intracellular anatomical structure | Interproscan |
| Expression trend for OS493_014230-T1 global co-expression network |