Gene detail

Detailed information of OS493_014229-T1 in Lophelia pertusa Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
OS493_014229-T1	ATP-DEPENDENT RNA HELICASE	scaffold_40	927769	931569	+

Gene Structure

More details in Jbrowse Sequence

CDS

OS493_014229-T1

ATGTTTCCCGTAGATGTCGTATGGAAAGATGAGCCATCGAGTAATGTTGAAAATTATCTTCAAGAGGCTGTTAACACAGTTCGGGAAATTCACCACGAGCAAGGTCCAGGAGATATTCTGGTTTTCCTTACTTCCCCAGTGGAAACAGAACGTGCGTGTGAAAAGTTAGCGAAGGCCGAGCTTGACCCAAACCTGGTTTGTCTTCCTCTTCATGGAAAGCTACGTCAAGAAGAGCAAAGGAGAGTTTTCGAGGAAGACCCGAGCAAACGCAAGGTAGTATTTGCAACCAACTGTGCAGAGACATCCATTACTATTCCTGGAATAAGGTACGTGGTGGACACTGGCATGGTAAAGGAAATGAAGTTTGAACCGAAACGAAGCAAAAGTTCTTTAGAATTAACAACTATTAACAAGAGTTCTGCTGAACAGCGCAAAGGAAGAGCGGGGAGGACACAGGCAGGAAAGTGCTTCAGACTTTACAGCGAGGAAGAGTATGCATCAATGGAAGATCAATCCAAACCGGAGATTCTAAGAGTTCATCTTGGCCAGGCAGTGCTGAAACTAATGGATCTTGGCATTGAAAACATCACTGAGTTCGAGTTTGTGGAATCGCCGCCTCTTGACGCAATAGAACTTGCCTTAGAGGCGTTGACATCTCTTGGTGCCATAGCCAACGGACAGCTTACTGAGCTGGGCCACAAAATTGCGCGAGTAGCTGTAGAGCCACGCTTAGCCAAGGTGATATTTGACGGCATTGATCAAGGAGTTGGTGCGGAAGCATTGGCTTTGGCAGCGATCGCAACTGTAAGTGGAAGCGTATTCTTCCGCATGGGCAGCGAAGAAGACAAGCAGCTTGCTGACAGTAGAAAAGTTGGTTTCTGTCACAATGGTGGTGATTTGTTGACATTGTTGGAAGTGTACCGACAATACCTAAAGCAGCCTAAAGGTAAACGAAACAAGTGGGCCTTTGATAACAGCCTAAATGCTAAGTCGCTTCGCTTGACAGACGAGACCATCAAAGAGCTCAATCTGACATTAAAGCGTGAACTTTGCATTCCGGTACCGGATGCTTTTGGAGAAGACGAGAGCGCTGATCTGAAACTACAAAGGATTTTGCTTTCTTGCTATGCGACCAACCTGTGTGTGTTTACTGGCCATGAGAAAGCAGGATACAGAGTGGTATCATTTAATCATTGTGTACAGTTGCATCCTTCTTCGTCTCTTAGGTTCCTTGGAGCAACACCTCAGTTTATCGTGTTTGAGCAGCTGCTCAAGACATCTCGTGACTTTGTCATGAACGCGACCCCAGTAGAGGAGACGTGGCTGAGGGAAATTATTTCAGAAGGAGCTGTCAAGTATGATTTGGAAGAGCTGATGTCGACCGTGCTGAAAGAAGTTGCATTGCCTTGTAGTCCAGACCTTATAACTTTGGCTTTTGGAGGCCGATTCCAAAGACGAAAGCTTGATGAAGTTGAAGAGAAGGTGTCGAAATCATGCGATGACAGTTTGGTTGTACTAGAGAAAGACGAAGCGCAAGGACAAATGAAGATCTTCGTGCCAGTAAGTCAGACAGCGAGGGCTGTCTCTGTGTTGGAGGGCCTCTTGGAGGAAAGCAGGAAGATACTGAGGAGCGAGGAAAGAGAAGAACAACTTAAAGAAGAGTGCCAAGGAAGTAGAATTGTTTGGGGACAAGGCGGTGAAGTAAAGGAACTGCTAATGCCTCATATGTACAGGACTGTCACCATCGGTGAGATAGATGATGGCTACGCCGTGCCGATTGTCTTAGATTACCTGAAATCGTGTGGAGACATCATGAAACACCATGTCAAGGAACAGGATGGCAAAATACGAGTTTTTGCAACCTTTAAGAATTCTGAGGGTGCGGTTAAGGCGGTGAAGGGCTCTTCCAGTAACTCCCTCGTTAACGGAAAAGTGAAGCCAAGCCATTCGATATCTGATGGCACTCGCACGTATGTTTCTCAGTTTAAAGTGAAAGCTAAGTGGCTCAGACGTCCTGGCAAAGGTACCGGCTGTATACAATTCTTCAATGATGAAGATTTCTTCCATACACTTGGCAGTCTCCCATCGCTTATGATAAAGTCAAGGCAGACAAAATTTCAAGTGGACAGGTTTCATGAAGAGCAAATATTCATGAGGGGGCTCGACCCTGAAACATCAGAGAACGATGTGAAGTCTGCTATCGAAGAAAGGCTCCCCGCTGTGAAAGTGAAAAAGGTATTTATCCACCGAACATCAGAATTTGACACAACCGATGAGACCCTTACTTCACAGAAGACATCCCTCCAAGAATGTCTTGGCGTCTTTGCTACTGAAGGCCAGTATTCCGTTTATCTGGGTAAACCTTCACCAAAAAATTTCGACGGATTTGCCAATCTGACTTTCCAAGACTCCGAGGAGGGTCAAGCAGCCGTGAAAGGTCTTAATGGAAGGCACATCTCTGGTATTGGAGTCGTAACTCTGCATCCCAACCTTTCAACAACCTTGCTATGTACCAGAAATGTCTACGCCGTCACTGAAGATGAACTGAAAGAAATTTTCAACGAATTAGACCGGACCTTTGGCAAGAAGCTAGTTATAAAGGTTAACAATCAACGAAAAGACAAGCGCGTTGCCATAGAAATTCGAAGTGACTGTACGGAGCACTTTATTCGTGCAACTACAATTCTCACCGATACACTCAACGGAGATAAAATTGACTGCAAGATCTCTAAAGTCCTGGAAATTCTTTTGACCAATCCAGTGAAAGACGATCTTCAAGCCATTCAGAAAGACACTGGAACTGTCATCAATCAAGATTGGAAGAACCACGTTGTTCGAATACATGGAAGCGAAGCCAATCGAGAATTAGCAAAACGAGCTATCAACAAGTTTCTCGATGATTCCATCACAAGTAACAGTCACTCATGGCAGATTCAGCTTCGAGGACCTAACAAGCCCCGCGGGCTGCTAAAAGCTCTGTTTATAAGGTTTGGCGTCAATCTTCAAAGGTTACAAGATATTGGTGGTGTCCAAAAGATCCATGTTGAATTCCGATGGCACGTACTTAAGATCCAGAGTTCAGACGAGGCTCAGGAAACAATCAACCGCTATGTGGAGGAATGTTGCAAAACTCTTCCCCAAGAATCGCCCCATTTACACTCCAACGATCAAAGCCAGTTAACGTGTGGTATCTGCCTGTGTGATGTGGATGGAACTGCAGCTGATGTGTACAGACTCGCTTGCTGTGGTCATGCGTACGACAAGAGTTGTGTTATTCAGCAACTGAAATCTCCTGACTTCCCACTAAAGTGTGTCACAGAACGCTGTGAAGAGCTTCTTGTATGGAGAGATTTTCAGAATCTGTTGAACGAAAGAGAGAGGAAGAGGCTTGCTTTCAGTGCCCTAGACGAGTATGTCAAAGGAAATCCTGAAATTGTTAGATATTGCCCAACAGCCGATTGTGGCATGGTGTACCGCGTTTCAAAGGAAGGAACACGCTACAGTTGTGGTGCATGCCTATCTGAGATATGCACATCTTGCCACGTGCAGTGGCACAACGGCCTCACCTGTGCCATGTTGAGATCAGAGAAGCAAGTCGAGGGACAACTCAAGGAGTGGATGACGAAGGACCCAAGCAATAGGAAGAACTGTCCCAGATGCAAGACACCAATTGAAAAGAATGCAGGCTGCAATCACATGGAGTGCTCGCAGTGTAAAGCGCACATGTGTTGGCCGTGTATGGAAGTCTTTCCAACGGGAGACGCGGTATACAGTCATCAACAATACTGTCCAGGAAGATGA

Transcript

OS493_014229-T1

Protein

Gene family

Gene family	Subfamily
Ubiquitin Family	E3\|E3 activity\|RBR

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00271	Helicase_C	Helicase conserved C-terminal domain	Domain	Interproscan
PF01485	IBR	IBR domain, a half RING-finger domain	Domain	Interproscan
PF04408	HA2_N	Helicase associated domain (HA2), winged-helix	Domain	Interproscan
PF07717	OB_NTP_bind	Oligonucleotide/oligosaccharide-binding (OB)-fold	Domain	Interproscan
PF21010	HA2_C	Helicase associated domain (HA2), ratchet-like	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001650	Domain	Helicase, C-terminal domain-like	Interproscan
IPR002867	Domain	IBR domain	Interproscan
IPR007502	Domain	Helicase-associated domain	Interproscan
IPR011709	Domain	DEAD-box helicase, OB fold	Interproscan
IPR012677	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR035979	Homologous_superfamily	RNA-binding domain superfamily	Interproscan
IPR036612	Homologous_superfamily	K Homology domain, type 1 superfamily	Interproscan
IPR044066	Domain	TRIAD supradomain	Interproscan
IPR048333	Domain	Helicase associated domain (HA2), winged-helix domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR18934	ATP-DEPENDENT RNA HELICASE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0004386	Molecular Function	helicase activity	Interproscan
GO:0005622	Cellular Component	intracellular anatomical structure	Interproscan
GO:0008270	Molecular Function	zinc ion binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for OS493_014229-T1 global RNA-seq network