Gene detail

Detailed information of OS493_014087-T1 in Lophelia pertusa Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
OS493_014087-T1	DNA REPAIR PROTEIN REV1	scaffold_39	1644711	1656424	-

Gene Structure

More details in Jbrowse Sequence

CDS

OS493_014087-T1

ATGAAAGAAATGTTAACTGCAGAGAATGCCGTAGAAGGTAGTGAAACTGAAGATTTTGGCGATAATGATGAGGATGAAGAGTTGTATGGTATTGATGAACAAGACAAGAGTGATCCTACTTCAACTTTACAAATGACAAACACTTTAGAAGCAACAACTTCAACAAACGTAACTGATGATACATTATTTAAGAAACCCAGTACAAGCAGCTTACCTAAAGCCGGTGATGCAAACTTTGTATCAGAATTTTATAACAATTCCAGACTGCATTATTTATCTACATGGGGTGCAGAATTCAAGAAGTACACTAGTGATATTATCAAGTCTTGTGCAGCTAAAGGGTGGAAGTGTCGAGGCACTGGCCGGGCGGGGCCACATGGTCGTGTTATTATGCATATAGACATGGATTCATTCTTTGTGTCTGTAACGCTACGGGATCAGCCGCATCTCCGAGGCAAACCTATTGCTGTTTGTCATGCTGGCAAGAATAATTCATCAACTGACCAAGTATCCACCAGTAACCAGCAAACGTCACCGAACAAGCCGTCATCATTCTTCAACTCCATGTCAGAAATCGCTTCCTGCAGCTACGAAGCGAGGGCCACTGGGGTTCGTAACGGCATGTTCCTGGGCGCGGCCCGTAAACTCTGTCCTGAGATTTACTGTGTTCCTTACCAGTTTGATCAATATCGGCAAGTGTCACAAAGTCTCTACGATATTTTGGTGACGTATAGTCATGAGATCGAGGCTGTGAGTTGCGACGAGGCTTATATTGACGTGTCGGAGACACTGGAAGAGGGTGAAACACCAACACAGCTAGCGGAGAAGATTCGCGCGGAGATCAAGGAAGCCACTCGCTGTATAGCCTCAGTTGGCATCGCGTCTAATGTTCTCCTGGCTAGGATGTGCACCAGAGTGGCTAAACCAGATGGCTGTTATTACTTGGGACCTGCTGATGATATCAACAAGTTCATGGGCCCCCAGAAGGTTAAAGACCTCCCAGGAGTGGGTTGGAGCCTGGGGCATAAGCTCCAGACCCTTGGAGTAGAAACATGTTTGGAGTTACAGAAGTTCAGCTCTCAAGCGTTACAGCGGGAGTTTGGACCCAAGACCGGACTTGTCTTGTACCAGTATTGCCGCGGTATTGACGATAGAGCTCTTCGAACTGAACGAGAAAGAAAGTCTGTGTCAGCGGAGATCAATTATGGAATCCGTTTCACGAAGGAAAGTGAAATGGAATTGTTTATCAATGAACTGGCCGAGGAAGTACAAAAAAGACTTCAGGCACTCGACATGAAGGGCAGGTGCATTACTCTAAAGATGAAGGTGCGCAAAGCAGGAGCGCCAACCCCAAAAAAGTTCATGGGTCACGGAATCTGCGATAACATCGCTCGCTCGTGCACTTTACCAACTGTCACGGACCAGGCTCAAGTCATTGCCAAACAGTGTCACGCACTCCTGAAGCAACTCAGTGTCACGCCAGAGGATATGCGAGGCATGGGAATTCAAGTCAGCAAGTTAACTGACAAGAACGCCGGTACCTCCGCCAAGAACTCAAGATCACTGTTTGATTTTTTGAAACCACAAACGACTGACAATGAGGTTGTCGCTGGACCCACTGCTTTGGATAGAGAAGCTGGAAACGAAGGAGAAAACAGTTATCGATCAATGTCTGAGAGTCCTAAACATGAAGAAAACAAACTTCCACCTTTACCAAGATTCTCGCCCCAGTTCGCTCAGCAGACTCGAGAATCTGAAGCCGAGACGAACCTAGGTGACCTGGGCGAGAGCCTGTACTTGCCCTCTCCATCTCAGATTGATCCCGCAGTATTCGAGGCTTTGCCTGAATATATTCGTAGGAGCATCGAGAAATCGTATGCCACTAGAAATCAGAGGATTTCACTCAACAGAACAGGAAAACAAGAGGAAGAAGACCCTGAACCTCAACGACTGCCCCGAAGAAAAACTACTAAGTCCAAACATGGTAAAACGGCTTCAAAACCTTCTCGGATATTATTTGAAGAGAATTCTCTAACGGAAGCAGCAGCGTGTCACAGAACGTCCGAGCTTCTACCATCTCCATCACAAATAGATCCAGAATTCCTGGCGGCGCTTCCTGATGACGCTCCACCCGAGAGAAGTACAGAAAGGAATACGATGAAGTTCCAAGCAGGCGATGTCCAGAAGAAAGAAGGTATTCAGGCCATCACTCCGCCAAAACAGGCGTGTTTAGGAGAAGCTGTTTCTCTTTCTGAAGTGAAGAAAGTTATCTCAGACTGGACGGAAGCTTATGAAGTTCCACTGGAAGAAGATATCGAAGTGTTCAATGAGTACTTGTTCCAACTTATTGCAACACAAAACTTGGAGCAGCTTTGGAGGGTCTTGAAGTTTCTCGACAGGCGAATTGAAGGACGTGAAGATTGGAGCAGTGTGTGTTGTGCTGTTTTGGATCACATTCAACAAGCACTCAACCAGAAATATAACAGCAAACTCTCTGTAAACTCGCTGAAGTTCTCCAACCGATAA

Transcript

OS493_014087-T1

Protein

Gene family

Gene family	Subfamily
Ubiquitin Family	UBD\|Alpha-Helix\|UBM

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00817	IMS	impB/mucB/samB family	Family	Interproscan
PF11799	IMS_C	impB/mucB/samB family C-terminal domain	Domain	Interproscan
PF14377	UBM	Ubiquitin binding region	Motif	Interproscan
PF16727	REV1_C	DNA repair protein REV1 C-terminal domain	Domain	Interproscan
PF21704	POLH-Rev1_HhH	DNApol eta/Rev1, HhH motif	Motif	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001126	Domain	UmuC domain	Interproscan
IPR012112	Family	DNA repair protein Rev1	Interproscan
IPR017961	Domain	DNA polymerase, Y-family, little finger domain	Interproscan
IPR022880	Family	DNA polymerase IV	Interproscan
IPR025527	Conserved_site	HUWE1/REV1, ubiquitin-binding motif	Interproscan
IPR031991	Domain	DNA repair protein Rev1, C-terminal	Interproscan
IPR036775	Homologous_superfamily	DNA polymerase, Y-family, little finger domain superfamily	Interproscan
IPR038401	Homologous_superfamily	Rev1, C-terminal domain superfamily	Interproscan
IPR043128	Homologous_superfamily	Reverse transcriptase/Diguanylate cyclase domain	Interproscan
IPR043502	Homologous_superfamily	DNA/RNA polymerase superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45990	DNA REPAIR PROTEIN REV1	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003684	Molecular Function	damaged DNA binding	Interproscan
GO:0003887	Molecular Function	DNA-directed DNA polymerase activity	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0006281	Biological Process	DNA repair	Interproscan
GO:0016779	Molecular Function	nucleotidyltransferase activity	Interproscan
GO:0017125	Molecular Function	deoxycytidyl transferase activity	Interproscan
GO:0042276	Biological Process	error-prone translesion synthesis	Interproscan
GO:0070987	Biological Process	error-free translesion synthesis	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for OS493_014087-T1 global RNA-seq network