Detailed information of OS493_013820-T1 in Lophelia pertusa

Genomic Location: scaffold_38:1590967...1599426
NR annotation: KAJ7385786.1, PAX3- and PAX7-binding protein 1 [Desmophyllum pertusum]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
Q9Y5B6PAX3- and PAX7-binding protein 1 OS=Homo sapiens OX=9606 GN=PAXBP1 PE=1 SV=2
P58501PAX3- and PAX7-binding protein 1 OS=Mus musculus OX=10090 GN=Paxbp1 PE=1 SV=3
P16383Intron Large complex component GCFC2 OS=Homo sapiens OX=9606 GN=GCFC2 PE=1 SV=2

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF07842GCFCGC-rich sequence DNA-binding factor-like proteinFamilyInterproscan
PF15458NTR2Nineteen complex-related protein 2FamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR022783DomainGCF, C-terminalInterproscan
IPR012890FamilyIntron Large complex component GCFC2-likeInterproscan
IPR028211FamilyPre-mRNA-splicing factor Ntr2Interproscan

 PANTHER
PANTHER termDescriptionSource
PTHR12214GC-RICH SEQUENCE DNA-BINDING FACTORInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0000398Biological ProcessmRNA splicing, via spliceosomeInterproscan
GO:0003677Molecular FunctionDNA bindingInterproscan
GO:0005634Cellular ComponentnucleusInterproscan
GO:0000390Biological Processspliceosomal complex disassemblyInterproscan
GO:0071008Cellular ComponentU2-type post-mRNA release spliceosomal complexInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K13211GCFC; GC-rich sequence DNA-binding factor-Spliceosomeko03041deepkoala

Expression pattern
 Expression trend for OS493_013820-T1 global co-expression network
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