Detailed information of OS493_013704-T1 in Lophelia pertusa

Genomic Location: scaffold_38:313800...314156
NR annotation: KAJ7385676.1, LSM domain [Desmophyllum pertusum]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
Q8QZX5U7 snRNA-associated Sm-like protein LSm10 OS=Mus musculus OX=10090 GN=Lsm10 PE=1 SV=1
Q969L4U7 snRNA-associated Sm-like protein LSm10 OS=Homo sapiens OX=9606 GN=LSM10 PE=1 SV=1
Q54F84Putative uncharacterized protein DDB_G0291015 OS=Dictyostelium discoideum OX=44689 GN=DDB_G0291015 PE=4 SV=1

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF01423LSMLSM domain DomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR052840FamilyU7 snRNA-associated Sm-likeInterproscan
IPR010920Homologous_superfamilyLSM domain superfamilyInterproscan
IPR047575DomainSm domainInterproscan
IPR001163DomainSm domain, eukaryotic/archaea-typeInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR21196U7 SNRNA-ASSOCIATED SM-LIKE PROTEIN LSM10Interproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0006398Biological ProcessmRNA 3'-end processing by stem-loop binding and cleavageInterproscan
GO:0016604Cellular Componentnuclear bodyInterproscan
GO:0071208Molecular Functionhistone pre-mRNA DCP bindingInterproscan
GO:0071209Molecular FunctionU7 snRNA bindingInterproscan
GO:0071254Cellular Componentcytoplasmic U snRNP bodyInterproscan
GO:0003723Molecular FunctionRNA bindingInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K25591LSM10; U7 snRNA-associated Sm-like protein LSm10-Messenger RNA biogenesisko03019deepkoala

Expression pattern
 Expression trend for OS493_013704-T1 global co-expression network
TOP