Detailed information of OS493_013683-T1 in Lophelia pertusa

Genomic Location: scaffold_38:151945...160106
NR annotation: KAJ7385657.1, regulation of intralumenal vesicle formation [Desmophyllum pertusum]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
Q9WVS6E3 ubiquitin-protein ligase parkin OS=Mus musculus OX=10090 GN=Prkn PE=1 SV=1
Q9JK66E3 ubiquitin-protein ligase parkin OS=Rattus norvegicus OX=10116 GN=Prkn PE=1 SV=1
O60260E3 ubiquitin-protein ligase parkin OS=Homo sapiens OX=9606 GN=PRKN PE=1 SV=2
 Gene family
Gene familySubfamily
Ubiquitin FamilyULD|UBL|NEDD8
Ubiquitin FamilyULD|UFD/UBQ|UBQ_PIM

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00240ubiquitinUbiquitin familyDomainInterproscan
PF17978zf-RING_14RING/Ubox like zinc-binding domainDomainInterproscan
PF17976zf-RING_12RING/Ubox like zinc-binding domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR003977FamilyE3 ubiquitin-protein ligase parkinInterproscan
IPR000626DomainUbiquitin-like domainInterproscan
IPR041170DomainRING/Ubox-like zinc-binding domainInterproscan
IPR047535DomainE3 ubiquitin-protein ligase parkin, RING finger, HC subclassInterproscan
IPR029071Homologous_superfamilyUbiquitin-like domain superfamilyInterproscan
IPR041565DomainParkin, RING/Ubox like zinc-binding domainInterproscan
IPR015496FamilyUbiquilinInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR10677UBIQUILINInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0004842Molecular Functionubiquitin-protein transferase activityInterproscan
GO:0005739Cellular ComponentmitochondrionInterproscan
GO:0005829Cellular ComponentcytosolInterproscan
GO:0005515Molecular Functionprotein bindingInterproscan
GO:0006511Biological Processubiquitin-dependent protein catabolic processInterproscan
GO:0031593Molecular Functionpolyubiquitin modification-dependent protein bindingInterproscan

Expression pattern
 Expression trend for OS493_013683-T1 global co-expression network
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