Detailed information of OS493_013681-T1 in Lophelia pertusa

Genomic Location: scaffold_38:142088...148073
NR annotation: KAJ7385655.1, regulation of intralumenal vesicle formation [Desmophyllum pertusum]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
O60260E3 ubiquitin-protein ligase parkin OS=Homo sapiens OX=9606 GN=PRKN PE=1 SV=2
Q9JK66E3 ubiquitin-protein ligase parkin OS=Rattus norvegicus OX=10116 GN=Prkn PE=1 SV=1
Q7KTX7E3 ubiquitin-protein ligase parkin OS=Drosophila melanogaster OX=7227 GN=park PE=1 SV=1
 Gene family
Gene familySubfamily
Ubiquitin FamilyE3|E3 activity|RBR

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF01485IBRIBR domain, a half RING-finger domainDomainInterproscan
PF00643zf-B_boxB-box zinc fingerDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR002867DomainIBR domainInterproscan
IPR000315DomainB-box-type zinc fingerInterproscan
IPR044066DomainTRIAD supradomainInterproscan
IPR003977FamilyE3 ubiquitin-protein ligase parkinInterproscan
IPR047534DomainE3 ubiquitin-protein ligase parkin, BRcat domainInterproscan

 PANTHER
PANTHER termDescriptionSource
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 Gene Ontology
GO termsCategoryDescriptionSource
GO:0008270Molecular Functionzinc ion bindingInterproscan
GO:0004842Molecular Functionubiquitin-protein transferase activityInterproscan
GO:0005739Cellular ComponentmitochondrionInterproscan
GO:0005829Cellular ComponentcytosolInterproscan

Expression pattern
 Expression trend for OS493_013681-T1 global co-expression network
TOP