Detailed information of OS493_013656-T1 in Lophelia pertusa

Genomic Location: scaffold_37:2718159...2718992
NR annotation: KAJ7392276.1, E3 ubiquitin-protein ligase siah1a [Desmophyllum pertusum]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
P61092E3 ubiquitin-protein ligase SIAH1A OS=Mus musculus OX=10090 GN=Siah1a PE=1 SV=1
Q920M9E3 ubiquitin-protein ligase SIAH1 OS=Rattus norvegicus OX=10116 GN=Siah1 PE=1 SV=2
Q7ZVG6E3 ubiquitin-protein ligase Siah1 OS=Danio rerio OX=7955 GN=siah1 PE=2 SV=2

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF21361Sina_ZnFSina, zinc fingerDomainInterproscan
PF03145Sina_TRAFSina, TRAF-like domainDomainInterproscan
PF21362Sina_RINGE3 ubiquitin-protein ligase sina/sinah, RING fingerDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR013010DomainZinc finger, SIAH-typeInterproscan
IPR018121DomainSeven-in-absentia protein, TRAF-like domainInterproscan
IPR001841DomainZinc finger, RING-typeInterproscan
IPR013083Homologous_superfamilyZinc finger, RING/FYVE/PHD-typeInterproscan
IPR008974Homologous_superfamilyTRAF-likeInterproscan
IPR049548DomainE3 ubiquitin-protein ligase Sina-like, RING fingerInterproscan
IPR004162FamilyE3 ubiquitin-protein ligase SINA-like, animalInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR45877E3 UBIQUITIN-PROTEIN LIGASE SIAH2Interproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0008270Molecular Functionzinc ion bindingInterproscan
GO:0005737Cellular ComponentcytoplasmInterproscan
GO:0006511Biological Processubiquitin-dependent protein catabolic processInterproscan
GO:0007275Biological Processmulticellular organism developmentInterproscan
GO:0005515Molecular Functionprotein bindingInterproscan
GO:0031624Molecular Functionubiquitin conjugating enzyme bindingInterproscan
GO:0043161Biological Processproteasome-mediated ubiquitin-dependent protein catabolic processInterproscan
GO:0061630Molecular Functionubiquitin protein ligase activityInterproscan

Expression pattern
 Expression trend for OS493_013656-T1 global co-expression network
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