Gene detail

Detailed information of OS493_013547-T1 in Lophelia pertusa

Genomic Location: scaffold_37:932449...935068
NR annotation: KAJ7392175.1, hypothetical protein OS493_013547 [Desmophyllum pertusum]

Gene Structure

More details in Jbrowse

Sequence

CDS

OS493_013547-T1

ATGGAAGATGCTTCAGTTCGGAATCCTAGAGAGAAAGCAGGTTTTCTCTCGCTGTTGACCTTCTCCTGGATCAACGATATTCTTAAACTTGGGAGCAAACAACCGTTGGAAGAGAAACACTTGTTTCCTGTCGAAACTTCAAATCAAGCAGAAAGACTGGTCGCTGACTTGGAGAGGGAATGGCTAGCAGAAGAACGAGTATCTGAACAAAACAGAACAAAGCCTCGTCTGTGGAGGGCCATGATGAGGGTTATTTCCAACAGAGAGTATATCACTTTGGCGCTATTTAGGTCTTTTTATACAATAACATTTATTCTCCTTCCTGTGATCGTATGGTTCTTCTTGAAAAGCATTTCTACAGCTTCCGGCATCAGTTACAAGACTACTCTGCCGTTTGTCATTGGTATTCCACTGGTCGCCATTACAAGATCTGCATGCCATGCTCAGGCGATATTTTTAGTGCAAGTGATAGCAGTCAGACTGAAAGTAGCGTCGATTGGACTTGTGTATAAAAAGATTCTTAATCTTAAAAGAAGTATATTAGAAGATACCATTTCAGAAAACACCATCAATCTTGTTTCCAACGATGCTCAAGCAATCGAGCAGTTGGGTTATGCCGTTTATACATTTTCGTTCTCTGTACTGGACATTACTGCCTCTATGGCACTTCTGTGGTATCTAGTTGCCTGGCAAGCGTTGATAGGAGCTTCTTTCTTCCTTGCTGTCGTTGCCTATGGATCATTTTCAGCTCATAAAGCAGGAAAAGTACGCCACCAATCAGCTGCAATAACCGACAAAAGATTAGAGATAATGAAAGACATCATCACTGGAATCCGCGTAGTGAAAATGTACGCCTGGGAATGGAACTTCACAGATCTGGTTGCACAAATAAGAAGAAAGGAAATCTCACTGATTCGTATCCGAGGATTCATCGTCTCCAGTATCTACGCTCTGTTCTTCACCAGTTCCGCCATTGCAGGATTCATTTCAGTCACGACACTGCTACTTACAGAAAACACACTGACGTCTTTTAAAGTTTTTACATTGCTTTCTATCTTAGCTAACCTTAAAATGGCAGTCACTATCTTTATAGCAGAATCACTACGCTATATCGCGGATGCCAGAACTGCATGCAACAGGATGCAACGCTTGATAGAAAAGAAATCTATCTTAGCATACAAAATGGACCACCATGCCAAGGACAAGCTGACTTCTTTAGAAGTTTATCTCAAAGGTAGAAGATATAGACCACAATTTATTAGAACTGAAAGCTTTAGAACAGGAACACCGACTTTGATTAGTGCTCGGAAACTTGAAGGCACATCTCAGAACATGCAACCACAGGCATGTATTGAAAACGTTTCATGTTTTTGGAGGCAAACGTCAGAACATCCTGCGCTACAAAATGTCTCATTAAGTGCTACTGACGGGCAACTTGTGGGCATAACGGGGCCAGTAGGAAGCGGCAAATCATCTTTACTAATGAGCATATTAGGAGAACTTCCAATATCGTCTGGTAAAATATATTGTATTGGAAAAATGGCATTCGTCTCCCAAATGCCTTGGGTTTATTCTGGCACTGTGCAAGAGAACATAGTTTTTGGTAGGCAGTTCGATGAGCAAAGGTACAATAAAGTTATTGAAGTCTGTCACTTGGACAAAGATATAGCACGCTTTGCAAAACGCGATCTAACTGAGATTGGACAACGTGGAGTGATCCTAAGTGGCGGTCAGCGTGCACGAGTGAGTCTGGCACGCGCGATCTACTCAGATGCAGACATCTACTTGTTGGATGATCCACTCAGTGCAGTGGATTCCAAAGTCGGCAAACATTTGTTTGATAGATGCATCAAAGAGTTCTTAGCCGGGAGAATACGTATTCTGGTCACTCATCAGTTGCAGTTTCTCAAACAGACAGACACTATTGTGATGCTCCAGAACGGCTCTGTCGTGTGTCAAGGTACATATAGTGAAATAGTAAAAGACAAGCAAAGGGTTTTCTCTCTTCCATCTGAAAGCAAAGCAAGGTTCCGATTGCGAGGAAGACAATGA

Transcript

OS493_013547-T1

Protein

Uniprot

Uniprot term	Description
O15439	ATP-binding cassette sub-family C member 4 OS=Homo sapiens OX=9606 GN=ABCC4 PE=1 SV=3
E9Q236	ATP-binding cassette sub-family C member 4 OS=Mus musculus OX=10090 GN=Abcc4 PE=1 SV=1
F1M3J4	ATP-binding cassette subfamily C member 4 OS=Rattus norvegicus OX=10116 GN=Abcc4 PE=1 SV=3

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00005	ABC_tran	ABC transporter	Domain	Interproscan
PF00664	ABC_membrane	ABC transporter transmembrane region	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036640	Homologous_superfamily	ABC transporter type 1, transmembrane domain superfamily	Interproscan
IPR003593	Domain	AAA+ ATPase domain	Interproscan
IPR003439	Domain	ABC transporter-like, ATP-binding domain	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR017871	Conserved_site	ABC transporter-like, conserved site	Interproscan
IPR011527	Domain	ABC transporter type 1, transmembrane domain	Interproscan
IPR050173	Family	ATP-binding cassette transporter C	Interproscan
IPR044746	Domain	ABC transporter C family, six-transmembrane helical domain 1	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24223	ATP-BINDING CASSETTE SUB-FAMILY C	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005524	Molecular Function	ATP binding	Interproscan
GO:0016020	Cellular Component	membrane	Interproscan
GO:0016887	Molecular Function	ATP hydrolysis activity	Interproscan
GO:0055085	Biological Process	transmembrane transport	Interproscan
GO:0140359	Molecular Function	ABC-type transporter activity	Interproscan
GO:0042626	Molecular Function	ATPase-coupled transmembrane transporter activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K05673	ABCC4; ATP-binding cassette, subfamily C (CFTR/MRP), member 4	-	Transporters	ko02000	deepkoala

Expression pattern

Expression trend for OS493_013547-T1 global co-expression network