Detailed information of OS493_013485-T1 in Lophelia pertusa

Genomic Location: scaffold_37:274603...288702
NR annotation: KAJ7392117.1, DNA-binding protein rfx6 [Desmophyllum pertusum]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
Q5RJA1DNA-binding protein RFX6 OS=Danio rerio OX=7955 GN=rfx6 PE=2 SV=2
D2HNW6DNA-binding protein RFX6 OS=Ailuropoda melanoleuca OX=9646 GN=RFX6 PE=3 SV=2
Q8HWS3DNA-binding protein RFX6 OS=Homo sapiens OX=9606 GN=RFX6 PE=1 SV=2

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF02257RFX_DNA_bindingRFX DNA-binding domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR036388Homologous_superfamilyWinged helix-like DNA-binding domain superfamilyInterproscan
IPR003150DomainDNA-binding RFX-type winged-helix domainInterproscan
IPR036390Homologous_superfamilyWinged helix DNA-binding domain superfamilyInterproscan
IPR039779FamilyRFX-like DNA-binding proteinInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR12619RFX TRANSCRIPTION FACTOR FAMILYInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0003677Molecular FunctionDNA bindingInterproscan
GO:0006355Biological Processregulation of DNA-templated transcriptionInterproscan
GO:0000978Molecular FunctionRNA polymerase II cis-regulatory region sequence-specific DNA bindingInterproscan
GO:0000981Molecular FunctionDNA-binding transcription factor activity, RNA polymerase II-specificInterproscan
GO:0003700Molecular FunctionDNA-binding transcription factor activityInterproscan
GO:0006357Biological Processregulation of transcription by RNA polymerase IIInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K19521RFX6; regulatory factor X 6-Transcription factorsko03000deepkoala

Expression pattern
 Expression trend for OS493_013485-T1 global co-expression network
TOP