Gene detail

Detailed information of OS493_012842-T1 in Lophelia pertusa Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
OS493_012842-T1	FAS-ASSOCIATED PROTEIN	scaffold_34	529388	536254	-

Gene Structure

More details in Jbrowse Sequence

CDS

OS493_012842-T1

ATGGATTCCAACGAGGAACCGCCGGCGGATGTGGACCAGATTTTCAACTTTTTGAAAGAAAAACGGAAAGTTGAAGAAAGTGTTTGCCAAACCTTTAAAGACGAAATGATGGATTCTACAGCCGTGAGGATGGCTAGTGATAAGGACTTTCAAGCTCTCGGTCTGCAGCGAAGAGGCGACATACTTGCTCTGCGATCATTCGTTTCAAGTGGTGCAGCTGATGAAGAAAAGGAAGGGAAGAAAAGAAAACTTCTTCTTCTGTCAAAACAACTTGGTTCCAAATCAACGAAAAAGAAGACATCCTCTAGCTCTCCGAGGGGGAAGTTTCAGTCATCAGAGGACGACAACCCTCTACCAACACGACCGTGTAAAAAAGTCCAAATCGGCTGGCAACACTTTAGAAATGAAGAAAATCGTTATGTTGGCGTCCGCTTGGTGAATGGAGGAGGCGGAAGAGAGGTATCGATTCCGCTGAATGCTTCAACGGAAGAAGTGGTTGACCTTATGAAAGACGTGTTTTTTCCGGATGGGAAGTCCACATTTGGTAGCACAGATCTAATGACATTCAAGTTAGGAAACTTTAAATGCGAGGAAATAAACGAGGAGTTCACTTTGGCAAAATACATTGCTAAGCACAAATTAACGAAAGTCAGACTGTATATTTTAACGAGGATGAGCCCAAAGCCAAAAAAGAAAAGCGAAGCTCACTATTCCAGTGACGACGACTTTGACTTTTCAACATCTGCTTTTGACCGCAAACAGGACACACCTTCAGGTAACCTCACAGGTTTGTTAGGTTCTTCAGAAGATAGGCGATCTCTGAGGGAAAGTCAAGACGACGAGTATCTCGAATCATTGGCAACAGACCAAGCAAAAGAAAGTGAGAAGCGAGAGGAGCTCCTTCGATGTCAGGCGGAAACTGAAAGGCAAGAAAGTCTGCGTCAAGCTCGAGCTATGAGGGTGTCTGATGAGCCAGATATAAGTGATCCACACATAACAGTGTCCTTAAGACACACGACACTTGGTGTTCAAACGCGCAGATTTCGAAAGAGTGGCGAAGTAGGAATTGTCTACGACTGGGTGGGGTCCCTCAGCTTGACTCCTGAGAATTTTACTCTTTCTATGGCTGATGATTTGAACCTCAACCCGACCTTGCCCATTGAAACTGTCGACCGTTCAATGCTTTCAATGTCTGAATGCAATGCAAGTCCAGCCTTTCCAGATGAAATTGTTTGTTTTCAAGGTTTTGGCGCATCGTCTGAAGATAGTTTAAATTCCACTGCCCAATCTGAAGAAACCATGTGGGCGCTTTCCAGTGTCTCAGAGGAGCTACCTCCAGTTTTGATGGAAGGGGATAAAGTGGAGGAAGTTGACGAAGAGGAAACCCCAGATGACACTTCTTTGACATCATCTGACTCGCGTATTTCCAATGACTCACCAGGAAGAAGTTTCAGGCAGATGGTTTTAAACGAAAGAAGAAAGGATTGTTTTCAGAAGTTGATTGAAAACGGCGTCAAAAATGTGTGGATACATCGCGAGACGGTCCTGCAGGACCTTTTGAAGGTTTATGAGTCCTCGAGTGATATTGCAGAAAGCTGGGCTACCTTTTCGTTTCATGGGGAGGAAGGAATGGATTTAGACGGCATAAAGAGGGAGGCTTATTCAATCTTCTGGAAACAACTTCTGGATGAATATTTCGAAGGTAGTAACACGTTTGTGCCCCGCATTGGACCAGACATTGAAGAATCGATGCTGAGGGCAGTGGGTCGAATAATCAGCCATCAATACGTTCTCACCGGCGTATTTCCAGTTCAGATCAATAAAGTGTTCATGGTTGCTATGCTTTGTGGCCGCAAAGCACTAACAGATGAAGACCTCATTGAATCCTTCCTGGCATATATATCAGGAAATGAGTCCATGGAGATGAGGGAAGTCATGAAGGAATGTAAGGAAGGAAAACTTACTGAGAAATCGTACGATTTCTTAGTTGACTTTTTCAGCGACTACCAAGTAACAAAGAGGCCATCGCCAACCAACTTACAAGCTACTCTGGTGCAGGTGGCGAAACATGAGTTGCTTTCGAAGCCTACCATGGCAATGGATATCATCAAAGAAGGTCTTGTTGGCGGAAGGTACAAAGAACTCTGGCAATGCAGTAAAGAAGATGTCTTTAAGATCTACGACATGATGCAACTGACGCCTTCACGAGTTCTATCTATGCTTGCCGAGGACCCATCAACGCACATACACAAATCACAACTTCAAGTCTTCTCGTACCTCAAGAAATACATCAGGGGCCTTGGGCGTGAGGATCTTGGGCGATTCCTTCGGTATATCACCGGCAGCCCCATTCCGGTTGTGGAAAGAATCCAAGTAACTTTCCACGCTCATCAGTTAGGTTCCTTGCCACACCCAATGGCACACACCTGTGCAGCCGTGTTGGACTTGCCGTCTGGTGGCTATGACAGCTTTAATGACTTCAGAAAGCAAATGAACGCACTCCTGGACAACGAGTTGTCATGGAAATTCAATTCATTGTAA

Transcript

OS493_012842-T1

Protein

Gene family

Gene family	Subfamily
Ubiquitin Family	E3\|E3 activity\|HECT

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00632	HECT	HECT-domain (ubiquitin-transferase)	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000569	Domain	HECT domain	Interproscan
IPR035983	Homologous_superfamily	HECT, E3 ligase catalytic domain	Interproscan
IPR050730	Family	UBX domain-containing protein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23322	FAS-ASSOCIATED PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0004842	Molecular Function	ubiquitin-protein transferase activity	Interproscan
GO:0005783	Cellular Component	endoplasmic reticulum	Interproscan
GO:0030433	Biological Process	obsolete ubiquitin-dependent ERAD pathway	Interproscan
GO:0043130	Molecular Function	ubiquitin binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for OS493_012842-T1 global RNA-seq network