Gene detail

Detailed information of OS493_012789-T1 in Lophelia pertusa Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
OS493_012789-T1	ATP-DEPENDENT RNA HELICASE	scaffold_33	3074990	3082198	+

Gene Structure

More details in Jbrowse Sequence

CDS

OS493_012789-T1

ATGAATCGCGGTCGTGGTGGATCTCGTAGACCGAATCGCGGGGGAGGACGTTTTAATATAAAGCCTAGAACTTTAAATCGTGCCGTTCTTTCTTCAGAAGCAACAGAAGACCGAGAAGATTTGGAAGGCTACGTATACAAAAAAGACGATGAAGAACTACATGTACCTGTACATGGCGATGCCGCAATTCGTGACCCTTCGCCAGATCAAGGCAGAAAGAGCGCAATGCCAGTGAAAAGTAACAGATGGCGGTCCAAGGCTGCGATTCAAAGACTGCATATGAGCACCGAGAACCAAGAAATGATAGCAGAGGTACTTCGGGACCTTCAACTTGCTAGGACGAGCCGTGATGGTTGTATAGAGCGCCTGGATTTCGATGTTAAACAGGCTAAGAGAAATGAAGCTTACTGGAAGAAAGTTGGAGATCAGAAACTAGTGATTGAAAGCGGCATTAGCTATGCTGCTGACCGTGACGGTGATTTACAAGTTGAGATAGACGAACAAATTTACAGCTCTTTCGCGATAAAGAAGCTGGTTCAGTGCGGCTTTGAGAAAAAGAGGTGCACAGACGCCCTAAGACAGTGTGATGGGGATCTAGGGGCAGCTCTAGAGTCATTACTTTGTAGTTGTTGCGAACTAAGTCACCTCGGAAAAGAAAATCCAGATTACAGTGAGGAAAAATTTCAAGAAGCATCTATTCAAAGGCAGGAAGAAGTAATGACTCTTGAATCAATTTTCAATGATGCATTCACAGAAGTTATTACAGATAGTGTGTGGACTATCAAACTATCATTGCCTTTTCTACTAGACAAATTTAAAGTGAACGATTGTGGAGGAAACGTACACAAAAGCAAGACAACCAAAAAGGTGGATAAGTCTGCCCGGAATGTTTGTAGATTTTTCTTACAAGGTCATTGCAGATTTGGAGACAAATGCAGACAAAGTCATGCTGAATCTGACAAAGGAACAAGCTCAAATGATACAAAAAGCAAGCCGGAAATGAAAGATCCAGTTACTGAGGTGAAAACAGATCCACCCTGTCCATTTAATCTCGAAGTTAGATTTTGTAAAGGATCCCTATACCCCTTTGAACCTCCAATGGTTGTATTTTACTCTACACATGAATTAGTTCCGCCATCAGGTTGTCTTAATGTCACATTAAGACTCAACAGAGAAGCTAAGGATTTGTGCAATGCTGAGAGCCCGGTGATCTTTTGCCTTGCCAGCCTTTTGGATAACGAAGAAGAAATCATGGAATGCTTTAAAATGCTACCTTCTGAGTATAGCTTGCCAGGAAAGAGTGTTACTACCCTGCAAATCTCACAAAGCAGCAGATTTGAAAGATCGTCTGTGTCAAGTGATAAAAGAGAAGTGGTAAATAAGAAGTTGGGAATGACACAACCACAAGCATCATCCGATGACCTTGAAACCCACGAGAAAAACAGGAAACTCAAACAACAGTTTCAACGATTGCAGTCTGTTCCAGCCTATAAGTCAATGCTTGAGGAAAGAAAAAAGCTTCCTGCCTGGAAATCACAAGAAAACATCATAGAAAAACTCCAGAACCATCAAGTTGTTGTTATCAGTGGGATGACAGGATGTGGCAAGACAACTCAGATTCCGCAGTTCATCCTTGACAGTTATCTCATGAGTGGCCATGGCGGTGAATGCTTCATTGTCTGTACACAGCCACGCCGAATCTCTGCCATGTCAGTGGCAGAACGCGTGTCCAATGAGAGAGTTGACAAGATTGGACAATCGGTGGGTTATCAAGTCAGGCTGGAAAATAAACAGTCCCAAGGAACACGCTTATTGTACTGTACTACAGGAATTCTGTTACGTCGTTTAGAAGGCGAATCCAGTTTACCAGGTGTGAGTCATATCATTGTGGACGAAGTTCATGAAAGAACTGAGGAAAGTGACTTTCTCATGATGGTCCTGAAAGACCTGTTGAGCGTGAGAGCTGATGTTCGGGTTATACTGATGAGTGCTACACTGAATGCTCAGTTGTTCTCAGAGTATTTCTTTGATGCCCCTGTTATTCACATACCAGGTATAAATATTCTTTTATTGCCATACTGCTACCAAAGATTATTTCAAGTTGACCCTAGTTCACCCTATGCAAAACCAATGAAATGTTCCAATGTACCTGGTACGGCAAGCAAAAAGGGACAGTTAAGTAAAGATATTCAACAAATACAGGACTCAGTCTCATTTGCCGACTTCACACCTCCTGATGATAGACTGGATGATGAAAACTTGACAGAAGATCAAATAGCCTGGAGATATTCCAGTAAGCAATAA

Transcript

OS493_012789-T1

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00270	DEAD	DEAD/DEAH box helicase	Domain	Interproscan
PF05773	RWD	RWD domain	Domain	Interproscan
PF18044	zf-CCCH_4	CCCH-type zinc finger	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000571	Domain	Zinc finger, CCCH-type	Interproscan
IPR002464	Conserved_site	DNA/RNA helicase, ATP-dependent, DEAH-box type, conserved site	Interproscan
IPR006575	Domain	RWD domain	Interproscan
IPR009060	Homologous_superfamily	UBA-like superfamily	Interproscan
IPR011545	Domain	DEAD/DEAH box helicase domain	Interproscan
IPR014001	Domain	Helicase superfamily 1/2, ATP-binding domain	Interproscan
IPR015940	Domain	Ubiquitin-associated domain	Interproscan
IPR016135	Homologous_superfamily	Ubiquitin-conjugating enzyme/RWD-like	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR036855	Homologous_superfamily	Zinc finger, CCCH-type superfamily	Interproscan
IPR041367	Domain	E3 ligase, CCCH-type zinc finger	Interproscan
IPR042615	Domain	DHX57, UBA domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR18934	ATP-DEPENDENT RNA HELICASE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0004386	Molecular Function	helicase activity	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0005524	Molecular Function	ATP binding	Interproscan
GO:0005622	Cellular Component	intracellular anatomical structure	Interproscan
GO:0046872	Molecular Function	metal ion binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for OS493_012789-T1 global RNA-seq network