Detailed information of OS493_012789-T1 in Lophelia pertusa

Genomic Location: scaffold_33:3074990...3082198
NR annotation: KAJ7380027.1, ATPdependent RNA helicase [Desmophyllum pertusum]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
Q6P158Putative ATP-dependent RNA helicase DHX57 OS=Homo sapiens OX=9606 GN=DHX57 PE=1 SV=2
Q6P5D3Putative ATP-dependent RNA helicase DHX57 OS=Mus musculus OX=10090 GN=Dhx57 PE=1 SV=2
F4ILR7DExH-box ATP-dependent RNA helicase DExH1 OS=Arabidopsis thaliana OX=3702 GN=At2g35920 PE=2 SV=1

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00270DEADDEAD/DEAH box helicaseDomainInterproscan
PF18044zf-CCCH_4CCCH-type zinc fingerDomainInterproscan
PF05773RWDRWD domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR042615DomainDHX57, UBA domainInterproscan
IPR011545DomainDEAD/DEAH box helicase domainInterproscan
IPR009060Homologous_superfamilyUBA-like superfamilyInterproscan
IPR041367DomainE3 ligase, CCCH-type zinc fingerInterproscan
IPR015940DomainUbiquitin-associated domainInterproscan
IPR006575DomainRWD domainInterproscan
IPR036855Homologous_superfamilyZinc finger, CCCH-type superfamilyInterproscan
IPR014001DomainHelicase superfamily 1/2, ATP-binding domainInterproscan
IPR000571DomainZinc finger, CCCH-typeInterproscan
IPR027417Homologous_superfamilyP-loop containing nucleoside triphosphate hydrolaseInterproscan
IPR002464Conserved_siteDNA/RNA helicase, ATP-dependent, DEAH-box type, conserved siteInterproscan
IPR016135Homologous_superfamilyUbiquitin-conjugating enzyme/RWD-likeInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR18934ATP-DEPENDENT RNA HELICASEInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0003676Molecular Functionnucleic acid bindingInterproscan
GO:0005524Molecular FunctionATP bindingInterproscan
GO:0005515Molecular Functionprotein bindingInterproscan
GO:0046872Molecular Functionmetal ion bindingInterproscan
GO:0003723Molecular FunctionRNA bindingInterproscan
GO:0004386Molecular Functionhelicase activityInterproscan
GO:0005622Cellular Componentintracellular anatomical structureInterproscan

Expression pattern
 Expression trend for OS493_012789-T1 global co-expression network
TOP