Detailed information of OS493_012768-T1 in Lophelia pertusa

Genomic Location: scaffold_33:2831354...2837108
NR annotation: KAJ7380006.1, hypothetical protein OS493_012768 [Desmophyllum pertusum]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
P23790Serum response factor OS=Xenopus laevis OX=8355 GN=srf PE=2 SV=1
Q90718Serum response factor (Fragment) OS=Gallus gallus OX=9031 GN=SRF PE=2 SV=1
P11831Serum response factor OS=Homo sapiens OX=9606 GN=SRF PE=1 SV=1

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00319SRF-TFSRF-type transcription factor (DNA-binding and dimerisation domain)DomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR002100DomainTranscription factor, MADS-boxInterproscan
IPR036879Homologous_superfamilyTranscription factor, MADS-box superfamilyInterproscan
IPR033897DomainMADS SRF-likeInterproscan
IPR050142FamilyMADS-box/MEF2 Transcription FactorInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR48019SERUM RESPONSE FACTOR HOMOLOGInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0003677Molecular FunctionDNA bindingInterproscan
GO:0046983Molecular Functionprotein dimerization activityInterproscan
GO:0000981Molecular FunctionDNA-binding transcription factor activity, RNA polymerase II-specificInterproscan
GO:0000987Molecular Functioncis-regulatory region sequence-specific DNA bindingInterproscan
GO:0045944Biological Processpositive regulation of transcription by RNA polymerase IIInterproscan
GO:0000978Molecular FunctionRNA polymerase II cis-regulatory region sequence-specific DNA bindingInterproscan
GO:0006357Biological Processregulation of transcription by RNA polymerase IIInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K04378SRF; serum response factor-Transcription factorsko03000deepkoala

Expression pattern
 Expression trend for OS493_012768-T1 global co-expression network
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