Detailed information of OS493_012429-T1 in Lophelia pertusa

Genomic Location: scaffold_32:2215079...2219330
NR annotation: KAJ7386088.1, Paired box protein Pax-6 [Desmophyllum pertusum]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
P26630Paired box protein Pax-6 OS=Danio rerio OX=7955 GN=pax6a PE=2 SV=1
O73917Paired box protein Pax-6 OS=Oryzias latipes OX=8090 GN=pax6 PE=2 SV=1
P55864Paired box protein Pax-6 OS=Xenopus laevis OX=8355 GN=pax6 PE=2 SV=1

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00046HomeodomainHomeodomainDomainInterproscan
PF00292PAX'Paired box' domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR001523DomainPaired domainInterproscan
IPR001356DomainHomeobox domainInterproscan
IPR009057Homologous_superfamilyHomeobox-like domain superfamilyInterproscan
IPR036388Homologous_superfamilyWinged helix-like DNA-binding domain superfamilyInterproscan
IPR017970Conserved_siteHomeobox, conserved siteInterproscan
IPR043182DomainPaired DNA-binding domainInterproscan
IPR043565FamilyPAX familyInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR45636PAIRED BOX PROTEIN PAX-6-RELATED-RELATEDInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0003677Molecular FunctionDNA bindingInterproscan
GO:0006355Biological Processregulation of DNA-templated transcriptionInterproscan
GO:0000981Molecular FunctionDNA-binding transcription factor activity, RNA polymerase II-specificInterproscan
GO:0000978Molecular FunctionRNA polymerase II cis-regulatory region sequence-specific DNA bindingInterproscan
GO:0006357Biological Processregulation of transcription by RNA polymerase IIInterproscan
GO:0048856Biological Processanatomical structure developmentInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K08031PAX6; paired box protein 6-Transcription factorsko03000deepkoala

Expression pattern
 Expression trend for OS493_012429-T1 global co-expression network
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