Gene detail

Detailed information of OS493_012000-T1 in Lophelia pertusa

Genomic Location: scaffold_31:589028...591052
NR annotation: KAJ7392341.1, hypothetical protein OS493_012000 [Desmophyllum pertusum]

Gene Structure

More details in Jbrowse

Sequence

CDS

OS493_012000-T1

ATGGACAAACTTTCCCAGCCCTCGACAAGTGATTGCACCAATCTCAGTCAAGCTCCTCAGTTGCATCATGCTAATTCTGCCACAAACCCAGGCCATCAAAACAAGAAGGGCCCCGGTAAAGTCCACTACTATCAGTGTGCGCATTGTGAAAAGGCCTTCTTGTACAAATCCAAACTGCTACTTCACGAGATAACCCACAGTGGCGAAAGGCCTTATAAGTGCGCTAATTGCGAGAAGACGTACAAGCGAGAGTCGGAGCTTGTGGTTCATCAGCGGGTTCACACTGGAGAACGACCTTTTAGTTGTAGAAAATGTGAAAAGGCCTTCAAGACAAAATCAGAGCTTGTAGTTCACGATAGGTTTCATACAGGTGAAAGGCCTTACAAATGTCTCCATTGCGAAAAGTCGTTTAGAACAGCGTCCGAGCTTGGTTTACACAACAAGGTCACTTCAGGTGAAAGGCATTTCAGATGTGCCAGGTGTACCAGAGGGTTTTTTCGGCAAGCTGATCTCACCATTCATGAGCGGAACCACTGCGGGGAGAAGCCGTACAAATGTAGCCATTGCGATAGAAGCTTCAGGACAGAATTGGAACACGAAAAACACGAGAAGAGTCACAGCATCGTAAAGTTTGTGAAGTGCACAGTTTGTGACAAGTCATTTAAAACAAAAGAACACCTTGAAGCTCATGTAAAGACTCACGTCGTTGAGAAGCCTTTCCATTGTTCAACATGTTCACAGTCCTTTAGCACTTCAAAAGAACTCTCAGCTCATAGCGAGACTCACGCTGGTAGAAGGCTTTACAAATGTTCTCAGTGCGAAAAGGCGTTTGCCTTCAAGTCCAAACTCTTTCAGCACTGGGTGATACACACCGGGGAAAGACCGTACAGATGCATCCAGTGCAATAAGTCTTATGGAAGGAAGTCAGAACTTGTAGTACATCAAAGGATACATACTGGGGAGAAACCTTTCAAGTGTACTAATTGTGAAAAGTGCTTCAAAACGACATCAGAACTGGTCGTACACTGCAGAACTCACACTGGTGAAAAACCGTACAAGTGCAGCTATTGTGAGAAGCAGTTCAAGACTGCTTCCGAACTTGGTGTCCACAGAAGAAGCCACATTGGTGACAAGCCATTTTCCTGCTCTCGGTGTGAAATGTCGTTTAAGCGAATGGCTGACCTCACTACACACAAGAGATTTCATTTGATCGACTTGCCCTTCACGTGCCATCTTTGTGTCATGGCTTTTGGAACTGCGTCAGAACTTGCCAATCACGAAGAATTACACAGTTCCATTCTCCATAATAGCTTGAACCAGGATGTTGGGTTGCCTGGTTCAAACGTAGACCAAGCGACTCAAAGCAATGGACAACCTCCAACCCAAGGACCTATTTCTGATCAAACATTGAATTTTGGCCAAGGACTTAAGATGGCACAACTTGCTCTAGCCAACGACAAAATGGCTCCTACTGAAGACCACAATGGGAAGGCCAATGGGAAGCTACACAACGGCGAGCCAGATCTTGACATGGACAAGCTCATGAAAATTGTCACAAAACCCTTCAAATGCAGCCAGTGCGGCAAAGCGTTTGTCTCCACCACTGAGCTGGCAGGGCACGTGAGAATTCACACCGGTCAAAGGCCATTCAAGTGTACTCAGTGCGAAAATTGCTATAGAACTCAGTCGACTCTTTCTGTTCACATGAAGAGCCACATCAAGGAAAAGCGATATAAATGTTCGTACTGTGAAGTGACGTGTCCCACACTTTCTAAATTGTACGATCATTACTCGCTTCATCAATCGGATAGGCCTCGTGAAGGTTCACAAGGCGCGAATAATCACTGCGCTCAAGAACGAATGATCGTAAACAGTGACGATATTTTACCATTCAGATGTTGGGTGTGCCAAAAACGTTTCGGTGATCAGGGGGCGTTAGATCATCACATCAGTCTACATCGAGACAGGAGTAGTACTCTTGAATCGTGTGTTAAGAAGTTGAAAAGCTCCATCGCGGAAAAATAA

Transcript

OS493_012000-T1

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00096	zf-C2H2	Zinc finger, C2H2 type	Domain	Interproscan
PF13912	zf-C2H2_6	C2H2-type zinc finger	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR013087	Domain	Zinc finger C2H2-type	Interproscan
IPR036236	Homologous_superfamily	Zinc finger C2H2 superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23226	ZINC FINGER AND SCAN DOMAIN-CONTAINING	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000978	Molecular Function	RNA polymerase II cis-regulatory region sequence-specific DNA binding	Interproscan
GO:0000981	Molecular Function	DNA-binding transcription factor activity, RNA polymerase II-specific	Interproscan
GO:0006357	Biological Process	regulation of transcription by RNA polymerase II	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K09228	KRAB; KRAB domain-containing zinc finger protein	-	Transcription factors	ko03000	deepkoala

Expression pattern

Expression trend for OS493_012000-T1 global co-expression network