Detailed information of OS493_011891-T1 in Lophelia pertusa

Genomic Location: scaffold_30:2822761...2838725
NR annotation: KAJ7336670.1, poly(A)-specific ribonuclease [Desmophyllum pertusum]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
Q5F450PAN2-PAN3 deadenylation complex catalytic subunit PAN2 OS=Gallus gallus OX=9031 GN=PAN2 PE=2 SV=1
Q504Q3PAN2-PAN3 deadenylation complex catalytic subunit PAN2 OS=Homo sapiens OX=9606 GN=PAN2 PE=1 SV=3
Q8BGF7PAN2-PAN3 deadenylation complex catalytic subunit Pan2 OS=Mus musculus OX=10090 GN=Pan2 PE=1 SV=1

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00929RNase_TExonucleaseFamilyInterproscan
PF13423UCH_1Ubiquitin carboxyl-terminal hydrolaseDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR028889DomainUbiquitin specific protease domainInterproscan
IPR038765Homologous_superfamilyPapain-like cysteine peptidase superfamilyInterproscan
IPR013520DomainExonuclease, RNase T/DNA polymerase IIIInterproscan
IPR028881DomainPAN2, UCH domainInterproscan
IPR036397Homologous_superfamilyRibonuclease H superfamilyInterproscan
IPR012337Homologous_superfamilyRibonuclease H-like superfamilyInterproscan
IPR050785FamilyPAN2-PAN3 complex catalytic subunitInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR15728DEADENYLATION COMPLEX CATALYTIC SUBUNIT PAN2Interproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0003676Molecular Functionnucleic acid bindingInterproscan
GO:0000289Biological Processnuclear-transcribed mRNA poly(A) tail shorteningInterproscan
GO:0000932Cellular ComponentP-bodyInterproscan
GO:0004535Molecular Functionpoly(A)-specific ribonuclease activityInterproscan
GO:0031251Cellular ComponentPAN complexInterproscan

Expression pattern
 Expression trend for OS493_011891-T1 global co-expression network
TOP