Detailed information of OS493_011877-T1 in Lophelia pertusa

Genomic Location: scaffold_30:2665944...2666940
NR annotation: KAJ7336656.1, homeobox [Desmophyllum pertusum]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
Q03358Homeobox protein MSX-2 OS=Mus musculus OX=10090 GN=Msx2 PE=1 SV=2
Q04281Homeobox protein XHOX-7.1 (Fragment) OS=Xenopus laevis OX=8355 PE=2 SV=1
Q0P5C3Homeobox protein MSX-2 OS=Bos taurus OX=9913 GN=MSX2 PE=2 SV=1

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00046HomeodomainHomeodomainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR050674FamilyMsh Homeobox Transcriptional RegulatorsInterproscan
IPR001356DomainHomeobox domainInterproscan
IPR009057Homologous_superfamilyHomeobox-like domain superfamilyInterproscan
IPR017970Conserved_siteHomeobox, conserved siteInterproscan
IPR000047Conserved_siteHelix-turn-helix motifInterproscan
IPR020479DomainHomeobox domain, metazoaInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR24338HOMEOBOX PROTEIN MSXInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0000977Molecular FunctionRNA polymerase II transcription regulatory region sequence-specific DNA bindingInterproscan
GO:0000981Molecular FunctionDNA-binding transcription factor activity, RNA polymerase II-specificInterproscan
GO:0005634Cellular ComponentnucleusInterproscan
GO:0006357Biological Processregulation of transcription by RNA polymerase IIInterproscan
GO:0048598Biological Processembryonic morphogenesisInterproscan
GO:0003677Molecular FunctionDNA bindingInterproscan
GO:0006355Biological Processregulation of DNA-templated transcriptionInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K09341MSX; homeobox protein MSX-Transcription factorsko03000deepkoala

Expression pattern
 Expression trend for OS493_011877-T1 global co-expression network
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