Detailed information of OS493_011522-T1 in Lophelia pertusa

Genomic Location: scaffold_29:2090821...2100300
NR annotation: KAJ7363240.1, hypothetical protein OS493_011522 [Desmophyllum pertusum]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
Q08874Microphthalmia-associated transcription factor OS=Mus musculus OX=10090 GN=Mitf PE=1 SV=4
O88368Microphthalmia-associated transcription factor OS=Rattus norvegicus OX=10116 GN=Mitf PE=2 SV=2
O75030Microphthalmia-associated transcription factor OS=Homo sapiens OX=9606 GN=MITF PE=1 SV=2

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF15951MITF_TFEB_C_3_NMITF/TFEB/TFEC/TFE3 N-terminusFamilyInterproscan
PF00010HLHHelix-loop-helix DNA-binding domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR036638Homologous_superfamilyHelix-loop-helix DNA-binding domain superfamilyInterproscan
IPR011598DomainMyc-type, basic helix-loop-helix (bHLH) domainInterproscan
IPR031867DomainMiT/TFE transcription factors, N-terminalInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR45776MIP04163PInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0000978Molecular FunctionRNA polymerase II cis-regulatory region sequence-specific DNA bindingInterproscan
GO:0000981Molecular FunctionDNA-binding transcription factor activity, RNA polymerase II-specificInterproscan
GO:0005634Cellular ComponentnucleusInterproscan
GO:0006357Biological Processregulation of transcription by RNA polymerase IIInterproscan
GO:0046983Molecular Functionprotein dimerization activityInterproscan

Expression pattern
 Expression trend for OS493_011522-T1 global co-expression network
TOP