Detailed information of OS493_011338-T1 in Lophelia pertusa

Genomic Location: scaffold_28:2972271...2976004
NR annotation: KAJ7373729.1, wD repeat domain [Desmophyllum pertusum]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
O88879Apoptotic protease-activating factor 1 OS=Mus musculus OX=10090 GN=Apaf1 PE=1 SV=3
Q9I9H8Apoptotic protease-activating factor 1 OS=Danio rerio OX=7955 GN=apaf1 PE=2 SV=1
Q9EPV5Apoptotic protease-activating factor 1 OS=Rattus norvegicus OX=10116 GN=Apaf1 PE=1 SV=1
 Gene family
Gene familySubfamily
Ubiquitin FamilyE3|E3 adaptor Cullin RING|DWD

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF21296APAF-1-like_WHDApoptotic protease-activating factor 1-like, winged-helix domainDomainInterproscan
PF17908APAF1_CAPAF-1 helical domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR015943Homologous_superfamilyWD40/YVTN repeat-like-containing domain superfamilyInterproscan
IPR048975DomainApoptotic protease-activating factor 1, winged-helix domainInterproscan
IPR036388Homologous_superfamilyWinged helix-like DNA-binding domain superfamilyInterproscan
IPR042197Homologous_superfamilyApoptotic protease-activating factors, helical domainInterproscan
IPR041452DomainAPAF-1 helical domainInterproscan
IPR036322Homologous_superfamilyWD40-repeat-containing domain superfamilyInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR22845APOPTOTIC PROTEASE-ACTIVATING FACTOR 1Interproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0005515Molecular Functionprotein bindingInterproscan

Expression pattern
 Expression trend for OS493_011338-T1 global co-expression network
TOP