Detailed information of OS493_010824-T1 in Lophelia pertusa

Genomic Location: scaffold_27:799952...806461
NR annotation: KAJ7380113.1, Cartilage matrix protein [Desmophyllum pertusum]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
A6H584Collagen alpha-5(VI) chain OS=Mus musculus OX=10090 GN=Col6a5 PE=1 SV=4
Q9QXH4Integrin alpha-X OS=Mus musculus OX=10090 GN=Itgax PE=1 SV=1
Q3V0T4Integrin alpha-D OS=Mus musculus OX=10090 GN=Itgad PE=1 SV=1

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00092VWAvon Willebrand factor type A domainDomainInterproscan
PF07648Kazal_2Kazal-type serine protease inhibitor domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR002035Domainvon Willebrand factor, type AInterproscan
IPR002350DomainKazal domainInterproscan
IPR036465Homologous_superfamilyvon Willebrand factor A-like domain superfamilyInterproscan
IPR036058Homologous_superfamilyKazal domain superfamilyInterproscan
IPR050525FamilyExtracellular Matrix Assembly and OrganizationInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR24020COLLAGEN ALPHAInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0005515Molecular Functionprotein bindingInterproscan
GO:0062023Cellular Componentcollagen-containing extracellular matrixInterproscan

Expression pattern
 Expression trend for OS493_010824-T1 global co-expression network
TOP