Gene detail

Detailed information of OS493_010802-T1 in Lophelia pertusa

Genomic Location: scaffold_27:556140...562220
NR annotation: KAJ7380092.1, hypothetical protein OS493_010802 [Desmophyllum pertusum]

Gene Structure

More details in Jbrowse

Sequence

CDS

OS493_010802-T1

ATGAACATTTCACCAAGAACAGCATTGCCCGTTTTCATTATACTGGCATTGAACTACGCATTTTCAGACGGAAACTGCAACAGTCAAGAAAATGAATCACTAGAAGTTGTTGGAGTGTTCGACTATAGCGACACTTCCTCTGTGGAAGGTTTTGAGAACGCTATCTCGCGACATAATTCTTTGAGGCAAGAGGAATGTGTCGTCAGCTTAACGTACAGGACGCTTCGTATCAAAAGCGATACGAGTTTTTCTGAGTTAATAGATCTTGCTAATGAAGCATTACAAGGTGGTCCTTGTTTTATGGTCTACGCAGCGGAGGATAGCAAAGGAAGAATTATTCTAGACATTGCAATAAGTCAAGGACTGAATGTTATTACAGCTATACAGGAGTTTTCTATGGAATACCCGTATAGAACGATAAATTACAAGTACGACCCAGTTCGTGTTGCCAGCGTGAACCGAGTAACAAGCATACAGACTAAGATAAGCGCCCTGTTGGCGCTCTTCAACAAATTAAAATGGAGGAAATTTGTCGCCGTTACAGATAATGAATACGAGTCTAATCGTTTTGTGAATTTACTTGAAGAACATCTTGGTCCAAGGAATCTGATAATGAAAGACTGGCTGCTCTTCACCACCGTTAATGAGATGTCTGATAGCTTTTATGATTTAGGAAATGACGCAAATAACATTCTCTTAATAACTAACGATCTCAACACCTCTAATGATATATTTAATGCCAAGCAACAAATATCTGAGGAAATGGATCAGTCAACTTGGATTTTCTCGTCTGATTTGGACGTTAGAACTTTCACTAACAACTCGTTTCCAAATGAGATTTACACTTTAACACCAAGATCGACTCAGGAAATCACCACTGATGGTTTTGTGGACGATGCTGTTCGTTCAATAAGCCTTGCTCTTGGGATGAGACCTGATGAGACCAACATTGGAACTTGCCCCAAAATGAATGAAATGCGAAGACTCTTGTTCGAGGTAAATTTTCATGGATCATCAGGACCAGTGCAGTTTGACCAATTGGGTGACCGAGTGCCTCTTGGTTATGATATTTGTCGAATGGAGTACGTAGGCGAACACGACGACGGTGGTGTAAAATCTCAGTACTTGCAATCGGGCTATTGGTCTAATAACAAGCTTTACATCACAGAACCAAATAGCATGCGTCGTCTGAGGATACTACTGAACGAGTATCCACCGAACGTCATGTCACAACCAAAAATACCTGGCGAGCCTTGCCAGTCGAGCTCTATGTCGTGCTTTAAGACGGTCGACACTCCAGACGGCGTCACGACGATTGAACGTTGCTGCTATGGTTTTGTTATCGATGTGCTAGGGATGGTTATCGGCGAATATAGTTTCATTCCTGAGTTGCTGTTCAGTTTAGATGGACAGTATGGAGTGTACGACGAGACAAACAACACTTGGAATGGGGTGGTGTCGGAACTGCTAACCGGCAGGGGAGACGCAAGTTTCGATCTGTACATTAGCTCGCGTAGGGCCACCGTGCTCGAATTCACTGAACCGTACATGCCATCTGGGATTCGCCTTCTGGCGAAGGAAAAGAAACGGGATACCAAAAGCCAAATTCACTGGCTCTCTTATCTACGACCCTTCACTTCACCAGTTTGGCTAACCCTGCTGGGTAGCTTGGGGGTAATGATCTTCTATTTGTGGGGAATCGACAAGATCAGTCCGGTCAGAGGATCGAATAAACTGTTCCATCAAAACTCTTCTTTCAAACTTGACAACGCGATTTGTTTCGCACTAGCTCTTGCATTTGGTCGCCCAGCAGATGAGTCGAAGCCAACGACAAATGGCGCTCGGCTTTCGTCGGTTGCTTTCGGAATGGCAATGCTGGTGTTCGTTTCAACGTATTCAGCCAATTTGGCTGCTTTTCTTATCGTGGATGATAAAACCACTCCAGTGGACGACATTTATGATATTAAGATTGAGCGCCCCCCGGATGGCTTTAAGTATGGTACTATTGAGGGATCTTACATGGCCGACTACTTCAAAAACAGCGAAAATGCGTATTTTCGTCACATTTGGTACAACATGCAAAAACACAACGTCAAAAGCCTTTCAGAAGGAGTTGAAGCTGCCAGAACAGGGAAGCTGGATGTTTTTATCGCGGATCACGTGGGTCTGGAATACGAATCGATGAATGATCCTCACTGCGAGCTCAAAGTTGTCGGCGAACCTTTCGCAATGTCCGGCGCATCCGTTGCCGTGAAAAAAGACAATCCATTGTTTATTCACCTCTCAGAGGCTCTTCAAAAGGTAAAAGCCAAAGGCTTGACAGACTTTATCCAGATGTTTTGGGTTTCAAAGTTTTCCTGCAAAAGAGAAATTCCTCCTGCTCAATTGAAGTTGGAGGATCTTAGTGGACTTTTTCTGCAGCTAACTATTGCTATGGTTGCTTGTATGTTGGGCACCATGTGCCACAGAACTTTTCTTGATATGAAAGAAAAGTGGACACGCGTTAATACTGACAATAAGGATGTGGATGAACAAGATCCAAGATGTAGATTTACACAAACAGAAACCCTTGTGTGA

Transcript

OS493_010802-T1

Protein

Uniprot

Uniprot term	Description
A0A1L8F5J9	Glutamate receptor ionotropic, NMDA 1 OS=Xenopus laevis OX=8355 GN=grin1 PE=1 SV=1
Q05586	Glutamate receptor ionotropic, NMDA 1 OS=Homo sapiens OX=9606 GN=GRIN1 PE=1 SV=1
Q5R1P0	Glutamate receptor ionotropic, NMDA 1 OS=Canis lupus familiaris OX=9615 GN=GRIN1 PE=2 SV=2

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00060	Lig_chan	Ligand-gated ion channel	Family	Interproscan
PF00497	SBP_bac_3	Bacterial extracellular solute-binding proteins, family 3	Domain	Interproscan
PF10613	Lig_chan-Glu_bd	Ligated ion channel L-glutamate- and glycine-binding site	Domain	Interproscan
PF01094	ANF_receptor	Receptor family ligand binding region	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001320	Domain	Ionotropic glutamate receptor, C-terminal	Interproscan
IPR019594	Domain	Ionotropic glutamate receptor, L-glutamate and glycine-binding domain	Interproscan
IPR028082	Homologous_superfamily	Periplasmic binding protein-like I	Interproscan
IPR001638	Domain	Solute-binding protein family 3/N-terminal domain of MltF	Interproscan
IPR001508	Family	Ionotropic glutamate receptor, metazoa	Interproscan
IPR001828	Domain	Receptor, ligand binding region	Interproscan
IPR015683	Family	Ionotropic glutamate receptor	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR18966	IONOTROPIC GLUTAMATE RECEPTOR	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0015276	Molecular Function	ligand-gated monoatomic ion channel activity	Interproscan
GO:0016020	Cellular Component	membrane	Interproscan
GO:0005216	Molecular Function	monoatomic ion channel activity	Interproscan
GO:0006811	Biological Process	monoatomic ion transport	Interproscan
GO:0038023	Molecular Function	signaling receptor activity	Interproscan
GO:0005886	Cellular Component	plasma membrane	Interproscan

Expression pattern

Expression trend for OS493_010802-T1 global co-expression network