Detailed information of OS493_010673-T1 in Lophelia pertusa

Genomic Location: scaffold_26:2105436...2110001
NR annotation: KAJ7386269.1, hypothetical protein OS493_010673 [Desmophyllum pertusum]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
P51128Retinoic acid receptor RXR-alpha OS=Xenopus laevis OX=8355 GN=rxra PE=1 SV=1
P28700Retinoic acid receptor RXR-alpha OS=Mus musculus OX=10090 GN=Rxra PE=1 SV=1
Q05343Retinoic acid receptor RXR-alpha OS=Rattus norvegicus OX=10116 GN=Rxra PE=1 SV=1
 Gene family
Gene familySubfamily
Transcription Factors FamilyESR-like
Transcription Factors FamilyNGFIB-like
Transcription Factors FamilyRXR-like
Transcription Factors FamilySF-like
Transcription Factors FamilyTHR-like
Transcription Factors FamilyGCNF-like

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00105zf-C4Zinc finger, C4 type (two domains)DomainInterproscan
PF00104Hormone_recepLigand-binding domain of nuclear hormone receptorDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR001628DomainZinc finger, nuclear hormone receptor-typeInterproscan
IPR001723FamilyNuclear hormone receptorInterproscan
IPR035500Homologous_superfamilyNuclear hormone receptor-like domain superfamilyInterproscan
IPR000536DomainNuclear hormone receptor, ligand-binding domainInterproscan
IPR013088Homologous_superfamilyZinc finger, NHR/GATA-typeInterproscan
IPR050200FamilyNuclear hormone receptor family NR3 subfamilyInterproscan
IPR003070FamilyNuclear receptor subfamily 4 group A member 1-3Interproscan

 PANTHER
PANTHER termDescriptionSource
PTHR48092KNIRPS-RELATED PROTEIN-RELATEDInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0003700Molecular FunctionDNA-binding transcription factor activityInterproscan
GO:0006355Biological Processregulation of DNA-templated transcriptionInterproscan
GO:0008270Molecular Functionzinc ion bindingInterproscan
GO:0043565Molecular Functionsequence-specific DNA bindingInterproscan
GO:0000790Cellular ComponentchromatinInterproscan
GO:0004879Molecular Functionnuclear receptor activityInterproscan
GO:0005634Cellular ComponentnucleusInterproscan
GO:0006357Biological Processregulation of transcription by RNA polymerase IIInterproscan
GO:0034056Molecular Functionestrogen response element bindingInterproscan
GO:0003677Molecular FunctionDNA bindingInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K08554NR3B3, ESRRG; estrogen-related receptor gamma-Nuclear receptorsko03310deepkoala

Expression pattern
 Expression trend for OS493_010673-T1 global co-expression network
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