Detailed information of OS493_010575-T1 in Lophelia pertusa

Genomic Location: scaffold_26:220338...264264
NR annotation: KAJ7386182.1, Splicing factor 3B subunit 1 [Desmophyllum pertusum]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
O75533Splicing factor 3B subunit 1 OS=Homo sapiens OX=9606 GN=SF3B1 PE=1 SV=3
Q99NB9Splicing factor 3B subunit 1 OS=Mus musculus OX=10090 GN=Sf3b1 PE=1 SV=1
O57683Splicing factor 3B subunit 1 OS=Xenopus laevis OX=8355 GN=sf3b1 PE=2 SV=1

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF08920SF3b1Splicing factor 3B subunit 1DomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR034085DomainTOG domainInterproscan
IPR016024Homologous_superfamilyArmadillo-type foldInterproscan
IPR038737FamilySplicing factor 3B subunit 1-likeInterproscan
IPR015016DomainSplicing factor 3B subunit 1Interproscan
IPR011989Homologous_superfamilyArmadillo-like helicalInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR12097SPLICING FACTOR 3B, SUBUNIT 1-RELATEDInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0000245Biological Processspliceosomal complex assemblyInterproscan
GO:0003729Molecular FunctionmRNA bindingInterproscan
GO:0005686Cellular ComponentU2 snRNPInterproscan
GO:0005689Cellular ComponentU12-type spliceosomal complexInterproscan
GO:0071004Cellular ComponentU2-type prespliceosomeInterproscan
GO:0071013Cellular Componentcatalytic step 2 spliceosomeInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K12828SF3B1, SAP155; splicing factor 3B subunit 1-Chromosome and associated proteinsko03036deepkoala

Expression pattern
 Expression trend for OS493_010575-T1 global co-expression network
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